Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1809 ATGGGTTTGCATCACAGAAAGTTGATACCACAAATCTGTGAATTGCTCTGTCATACTGAGCAAGAACCATGTTTATCAGATTGCAAAGTTTGTATCAAGGTATGTCTAACCAATCCATATTCTTATTATTATTCTCAACCACCACCATCAACACCTTTATACTTAGATCAACAAGAACACCATGAAGGGAAACACCACAAAATCTCCACTTATTTGATCCTATCTTTTTCTATTCTCCTTGCTGCTTTTTTTGTTGTTTGCTGCCATGCCATCTATACCAAGTTTTTTTCAAGAAGAAGAAGCAGAAGGGTATCAATATTATCAAGGCAGCAACAAACACAAGAGAACCATGATGATTTTGTTGATGAGGAACATGGTCCTGTTGTGGATCATCCTATTTGGTATATCCGTACTCTTGGTCTTCATGAATCAATTATCAGTGCAATCACAGTTTGTAAGTATAAGAAAGGAGAGGGTTTGATTGAAGGAACTGAGTGTTCTGTTTGTTTGAGTGAGTTTCAAGAAGATGAGAGTCTAAGACTTTTGCCTAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTGCATCTCATACCAATTGTCCTATGTGTAGAGCTCCAATTGTTACCAACCCTACAAGGATTCCATCTCTTCTGCCTAATAATGTTGTTCTTGATCCAACTTCTTTGGAAAATAGTGCTCCTCATACCCCTCAAGGACCTCAACTTAGGAATGGTTCAGAAGAAGGAGAGTGGGAAGTTCAAGATGAGACAAGGGTATGTGAAACTGAAAGTGTTGTGGTGAATATAAGACCAAGAAGATCTGTTTCTTTGGATTCATCTTCTGTTGCAAATATCAATCTTGCTCTTGCAAATGTTCAATCATCAGTTCAAAGTGGTGAAAATGAAGGGATTGTTTCAAAGAGGTTTATTACTGGAAATGAAAATTTTCCAACTAGTTCCAATTCCAAAAGAAGCTCATCTTTTAGGACAAGATATCTGCATAGTGTGCTGCATAGTTCAATGAAGAGGTCACATTCCTATAATGGTAAATACCTTGTATCCTGGTATAGCCTCAGTCAGAGGAAGCAAAATGCTTCTCTGGGAAGCTTTTAA 1125 0.3742 MGLHHRKLIPQICELLCHTEQEPCLSDCKVCIKVCLTNPYSYYYSQPPPSTPLYLDQQEHHEGKHHKISTYLILSFSILLAAFFVVCCHAIYTKFFSRRRSRRVSILSRQQQTQENHDDFVDEEHGPVVDHPIWYIRTLGLHESIISAITVCKYKKGEGLIEGTECSVCLSEFQEDESLRLLPKCHHAFHLPCIDTWLASHTNCPMCRAPIVTNPTRIPSLLPNNVVLDPTSLENSAPHTPQGPQLRNGSEEGEWEVQDETRVCETESVVVNIRPRRSVSLDSSSVANINLALANVQSSVQSGENEGIVSKRFITGNENFPTSSNSKRSSSFRTRYLHSVLHSSMKRSHSYNGKYLVSWYSLSQRKQNASLGSF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1809 374 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 365 IPR044675 -
Lal5g1809 374 MobiDBLite consensus disorder prediction 231 247 - -
Lal5g1809 374 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Lal5g1809 374 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 365 - -
Lal5g1809 374 Pfam Ring finger domain 165 208 IPR001841 -
Lal5g1809 374 MobiDBLite consensus disorder prediction 231 255 - -
Lal5g1809 374 CDD mRING-H2-C3H2C2D_ZSWM2 165 208 - -
Lal5g1809 374 SMART ring_2 166 207 IPR001841 -
Lal5g1809 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 215 IPR013083 -
Lal5g1809 374 SUPERFAMILY RING/U-box 160 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1809 Lal-Chr5 19951362 19952486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1809 5 212 C3H Transcription Factor Family AT1G72220 43.162 6.48e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1809 - - lja:Lj6g3v2193690.1 407.912