Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1804 ATGGACGCTCAAGGTAGTAGCGGTGGCGGTGGCGGTGGCGGTGGTGGAAGAGCTGAAGCGGAGCGGTGGCTCTACACCGCGAACAAGCTTTTAACCGCACGTGACTTGCACGGTGCCCGTTCATTCGCGATCCGTGCCCGAGAATCCGACCCGAGATTTGAAGCGACGGAGCTTCTACTGGTTGTTATTGACACTCTACTCGCCGGTGAGGCACGGATCGGAGAGCATTTACTCGATTGGTACTCAATCCTTCAGGTACTTCCATACACTCATAGTATTGAGTATATTGCTGCACAGTACCGTCGTCTCGCTATACTCCTTGATCCTCATCGTAACCCTTTCGCTTTCGCAACTCATGCCTTTCAGCTCGTGCATGACGCGTGGTCTGTCTTGTCTAACCCTAACAAGAAAATTGTCTATGATAATGACCTTAGGTTGTTGACTGAACCACCGCAACAACCGCCTCCTCCTCCGGTTGTTACCGGTTTTCAATTTCCCCCGCCCAGGCAAAACCAAAATCAAAACCAGCATCACGACAATCAGAATCAGTATCAGAATCATGTCTACCAGAGTCAACAGCAACAGCAGCAGCAGATTCCGATTAGGAAAAACCCTAAGCCTTCGAATCAGGCTAAGGTGCCGGTTGTTGAGGAAGAGAGACATAATGAGACTGAACTTGAACCGGTTCAGGTGAATCGAACTGGTGACCCGGCGTTGACTCGGTCTGAGACTGTGTCTGTGACTGAAGATGAGGTACTGAGTTTTTGGACTGCATGTCCTTATTGTTATGTTATGTATGAATATCCTAAGGTGTATGAGGAGTGTACGCTCCGGTGCCAGAGTTGCCGGAGGGGGTTTACTGCACTTGTGGTTAGGGCACCACCTAATTTGGGCATGAACGATGATGGTTATTGCAGTTGGGGGTTTATTCCGGTAGGGTTTTCAGGCAATTCCAAAGACTTGAGTGGGGGTTCTTCTGAGTGGAACCCGTTTTCCCCTTTGTTTCCTTGCCCTCTGAAGGGTCGGAGGGGTCGGAAGGGGCCTGTGGCTTACTATGATCAGGAAGCTTGCACTGCGTTTGTGGAGAAAGAACTTTCGGATACGAGTGATGATTCTGATGATGGGGATTGGCGGAATACTTACACTAAGAAGTTGAGGAAGAGGGCAAGGGGGAGTGGAAGAAGGACAGGCATTGCTTCTGCTAGTGGTGTTGTTAGGAGGTCAGCGGTTGATAGGCCGAGGAGGGGGGTTCAGAATAGTGCCGGGGATGGCAATGTGGATAACAGTGAGGCTGTTAATGGTGATGGTGGTGGTGGGTCTGCGCCTGCGGTGCCAGTTGCTGCGTGGTCAGACACGAGCAAGAAGGCTGCGTTGGTTGGTGCCAGGAGGAGGGCTGCAGGGAACTTGGGGAAGTTGGATTTGAATGTCGAGTTTAGCAATGAGGTGGAAGAGCATGCCCCTGGAGTGAGTGGACGGAATGGCAGGAATGCCAGTGGGACTGCGACTGGGACTGGGCATGCCGAGGATAACATCGAAGGCATTGGGTTTTTTGAGGGGCTTGATGAGTTCCTCAGTAGCTTACCCATTCTAAATGTTGTTGCCGATGATAAGGTTAAGGGTCACTAG 1626 0.5123 MDAQGSSGGGGGGGGGRAEAERWLYTANKLLTARDLHGARSFAIRARESDPRFEATELLLVVIDTLLAGEARIGEHLLDWYSILQVLPYTHSIEYIAAQYRRLAILLDPHRNPFAFATHAFQLVHDAWSVLSNPNKKIVYDNDLRLLTEPPQQPPPPPVVTGFQFPPPRQNQNQNQHHDNQNQYQNHVYQSQQQQQQQIPIRKNPKPSNQAKVPVVEEERHNETELEPVQVNRTGDPALTRSETVSVTEDEVLSFWTACPYCYVMYEYPKVYEECTLRCQSCRRGFTALVVRAPPNLGMNDDGYCSWGFIPVGFSGNSKDLSGGSSEWNPFSPLFPCPLKGRRGRKGPVAYYDQEACTAFVEKELSDTSDDSDDGDWRNTYTKKLRKRARGSGRRTGIASASGVVRRSAVDRPRRGVQNSAGDGNVDNSEAVNGDGGGGSAPAVPVAAWSDTSKKAALVGARRRAAGNLGKLDLNVEFSNEVEEHAPGVSGRNGRNASGTATGTGHAEDNIEGIGFFEGLDEFLSSLPILNVVADDKVKGH 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1804 541 ProSiteProfiles dnaJ domain profile. 79 144 IPR001623 -
Lal5g1804 541 SMART dnaj_3 78 136 IPR001623 -
Lal5g1804 541 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 193 541 - -
Lal5g1804 541 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 13 182 - -
Lal5g1804 541 MobiDBLite consensus disorder prediction 149 164 - -
Lal5g1804 541 MobiDBLite consensus disorder prediction 385 445 - -
Lal5g1804 541 MobiDBLite consensus disorder prediction 483 508 - -
Lal5g1804 541 MobiDBLite consensus disorder prediction 165 205 - -
Lal5g1804 541 ProSitePatterns Nt-dnaJ domain signature. 121 140 IPR018253 -
Lal5g1804 541 CDD DnaJ 79 133 IPR001623 -
Lal5g1804 541 Gene3D DnaJ domain 78 202 IPR036869 -
Lal5g1804 541 Pfam DnaJ domain 79 141 IPR001623 -
Lal5g1804 541 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 193 541 - -
Lal5g1804 541 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 13 182 - -
Lal5g1804 541 MobiDBLite consensus disorder prediction 147 226 - -
Lal5g1804 541 SUPERFAMILY Chaperone J-domain 76 144 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1804 Lal-Chr5 19938492 19940117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1804 19 540 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 37.570 5.62e-94 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1804 - - lang:109345659 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1804 5 19938492 19940117 Lal3g0042 3 250125 251756 LSH
Lal15g0538 15 3725515 3727550 Lal5g1804 5 19938492 19940117 PCT
Lal23g1011 23 11970549 11971946 Lal5g1804 5 19938492 19940117 PCT
Lal5g1804 5 19938492 19940117 Lal15g0538 15 3725515 3727550 PCT
Lal5g1804 5 19938492 19940117 Lal23g1011 23 11970549 11971946 PCT