Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1776 ATGGCTGAGGAGTTTCTTCAAGCTGGGATTTGTGGTGAAAACTGGTGGAGTATTAATGGAACAAGAAGTGTATTCCCTCTTATGAGCTCATCATCAACATGTTCAGTGGCTGCTAATGATGCAGGGAACTATAGCACATGGCAAACTGATTTCTTGGATTTGAAGCCAACAAGGTCTTGTGTTGAGGACACTAATAATAATAATTTGGTTTCTGATGCTTCTCTTGGTTTTCTTGATGCTCACAAACTACAACATAGTGAATCAGCAAGAGCTAGTGGAAATGATAGCATATTGATGGATTCTTCTTCCATACAAATGATGGGTTTTGGCTTGTCCTCTTCAACTTCATTGAATTGGAACCAGTCTCTATTTCATAGTAGTGGAAGCCAAGAGAGCATTTTTTATTCTTTGATACAAGAACCAGGCATAGATTCTTCTAATAATTCACAAATCCAAAAGGAATGGAGCTCAAATAAATCACAAAGCACAGTTGATGCTTTCAAGCCAATGAACCAAGAATTTTGCTTAGATCATCAAGGTCTAAGTTCTGTAACTAGTAGTGGGCAATCATGTGGTTTCCAAATAGAGTCAACAAGCTCCTATGGTTACCCTTCAAATTTGATTCAAAGCTTATATGAACCTGCTTATCCTCAACCACAACCACAGAACTCACTTTTCACCAACCCATCTACTAATTCCTACTCATCTGCACCAAACTATGGGACATCATCCTCCAATGAATTGTCACCAACAACATGGTCTGATGAAGTCCCTAATTCTTTTGTGCAAAAGCAACAGCTTAGCAGTGGATTGCACTTTTCCAACAATACTTCTTTCTGGAATGCTTCAGCTGAGGAACTAAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAAGCACAATATCAAACACCAACTTTTGAAGACAAATCCATCTCCCAAAGTACTCTACTAAACAAGCTCAAGGAAGATGATAAATCTTCAAACACAATATCAGTAGGGAAGAAGAGTGCTTGTGAACCACCATTCAAGAGGCCAAGAATTGAAACTCCATCACCATTGCCTACCTTTAAGGTTCGAAAAGAGAAGCTAGGGGACCGGATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACAGATACAGCATCTGTTCTTCATGAAGCCATAGACTACATCAAATTCCTACATGATCAAGTCAGTGTTTTGAGCACTTCATATCTAAAAAATGGATCTCCCATCCAATACCAGCAGGATTGTGATAATGTGAACCAAGATTTAAGGAGCCGAGGGCTATGTTTGGTACCGATTTCAAGCACATTCCCAGTAACTAATGAGACCACCATTGATTTCTGGACTCCTACATTTGGAAGCGTATTCAACAGCGGCTAG 1395 0.3964 MAEEFLQAGICGENWWSINGTRSVFPLMSSSSTCSVAANDAGNYSTWQTDFLDLKPTRSCVEDTNNNNLVSDASLGFLDAHKLQHSESARASGNDSILMDSSSIQMMGFGLSSSTSLNWNQSLFHSSGSQESIFYSLIQEPGIDSSNNSQIQKEWSSNKSQSTVDAFKPMNQEFCLDHQGLSSVTSSGQSCGFQIESTSSYGYPSNLIQSLYEPAYPQPQPQNSLFTNPSTNSYSSAPNYGTSSSNELSPTTWSDEVPNSFVQKQQLSSGLHFSNNTSFWNASAEELNDIRAGVFASSQAQYQTPTFEDKSISQSTLLNKLKEDDKSSNTISVGKKSACEPPFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIDYIKFLHDQVSVLSTSYLKNGSPIQYQQDCDNVNQDLRSRGLCLVPISSTFPVTNETTIDFWTPTFGSVFNSG 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1776 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 413 IPR036638 GO:0046983
Lal5g1776 464 CDD bHLH_AtbHLH_like 354 405 IPR045239 -
Lal5g1776 464 MobiDBLite consensus disorder prediction 218 254 - -
Lal5g1776 464 MobiDBLite consensus disorder prediction 323 354 - -
Lal5g1776 464 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 452 - -
Lal5g1776 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Lal5g1776 464 Gene3D - 358 416 IPR036638 GO:0046983
Lal5g1776 464 PANTHER TRANSCRIPTION FACTOR BHLH123 35 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1776 Lal-Chr5 19730298 19734031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1776 1 458 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 38.223 2.59e-64 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1776 - - lang:109333637 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1776 5 19730298 19734031 Lal11g0123 11 821733 825634 LSH