Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1768 ATGGGAAAAAAATCAACAGAGCAAGAGGAGGAGCCTCTGCCGAACCACCTCCGTTGCAGCCGCACCGATGGCCGGAAATGGCGATGCCGGCGGAGAGTTATGGTTTGTCTGAAGCTGTGTGAGACTCACTATTTCCAAGGTCGTCGTCGCCAGAACAAGGAGAAGGTTCCTGATTCACTCAAACTTCAGAGAAAAACCTCCACCACCACCAACAACAACCAAAACGGTGTCGTTTCAGAAAACGTGGAAATTAGGGCAAAATTGATGAAGAAGAAAAAGAAGAAGAGGAAGCAGAATTCAGAAGATGCAATTGGGCCTTCGAGGAAGGAAAAAAACAAAAATGTTGATATAAGGATAGAATTACTAACAATGGTTCTGGAGAGAGAGATTCAGAAAAGGGATAAGGAGAAGAAGACAAAAAAGAAAAATCAGAAAGAGAAGGAAGAAGAAGTTGATGAAGATGAATTGCTTTACAGTGAAGAAGAGTTGAGAAGAGAATTGCCAAATGGCGTTATGGAAATTGCTCCTGCTTCTTCAATGCACATTGTGGGTTCTCATTCTGATGTTAAAGTTTCCAGCTTTGATCAGAGATCAGTTACACTTACACCTCGTTACTTCAGGTCAAGGAATGTTGACAGGAACACCAATGTTGTTTCATGTGGAAGGAACTTAAAGAAGGGTAAGAGGAAGAGGAGGTGTCATTGGTGCCAGAGTAGTGATTCATGGAATTTTATTAAGTGTTCTAACTGTGAGAAGGAGTTCTTCTGCATGGATTGCATTAAAGAACGGTATTCTGAGACTCAAGATGAAGTTAAGATGGCATGTCCGGTTTGCCAGGGAACTTGCACTTGTAAAGATTGCTTTGCAAGTCAACGCAGAGACAATGAAAGTAAGGAATATTTGGATGGTAAAAGCAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGTATGCTTCTTCCTGTTCTAAAACAAATAAGTGAAGACCAGCAGACTGAGCTAGAAACAGAAGCAAAAGTTAATGGGAAAAGAATTTCTGATATTCTAATCAAGCAGGTTCAGTTTGGTTGCAATGAGGAAACAATCACTGCAAAACAACCATTTTGGATCTTCATAGAAGTTGCATTAGATGAATTTAGCCAAGGAAGCACCTCTGAAGAAATTAGCTCTTCTATGTCCAAGCTACCTGACAACAAGAACACTTGCATTGCCAGTGAAAACCACCTTTCAGATGATAAAGCCAGTTCTAGTAGCAATTTAAGTGCTATTTCAATATTGCCTGAGTGGACGAGTTGTAACGGCACTGCCAGTGTATCATGCCCTCCTACAGAGCTAGGTGGTTGTGGTGACAGCCGCCTTGATTTGAGATGTATTTTTCCATTAAGTTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAAAAAATCAAGCTGCTCACTGTGTAATGACAAAGATCATGAAACTAACGGGTATAAGCAGTTGCAAGAAGCAGCTCAAAGAGAAGATTCTAACGATAATTGCTTGTTTTATCCCACAGTTTTGGACATCAGACATGATCATTTTGAACACTTTCAGAAACACTGGGGTAAAGGTCATCCTGTAGTAGTGCGAGATGTGCTCCAAAGTACATCAAAGCTCAGTTGGGATCCACTGGTAATGTTCTGTGCTTATCTTGAGAGAAGCATTACAAGATATGAGAATGATAAGGACTCACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATCAACATTAAGCAGTATTTTACTGGGTCTTTTAAATACCAGTCTCAGAAAAACACTTGGCATGAGATGCTGAAACTAAAGGGGTGGTTGTCTTCCCAGCTGTTCAAAGAACAGTTTCCAGCTTATTTTGCTGAAGTAATTAATGCTCTACCAGTTCGAGAATACATGAGCCCTGTGTCTTGTCTTCTGAATTTAGCTGCAAATTTGCCAAAAGAGAGTTCAAAACATGACACAGGACCATATGTCTATATTTCATATGACTGTGCTGACAAAGAAGCTGTTTCTGTGACAAAACTCTGTTACGACTCATATGATGTGGTTAATATTATGGCACATGCCACAGATGACCCCCTGTCTGCAGAGCAGCTTACTAAAATAAGAAGGCTATTGAAAAAGCACAAAGCTCTGTGTCAAAGGGAGTCTTCTAAAAGTACTACAGACAATGCAGAAGATGCAGAACAAAAAGAATTGCGGAATATGGTAAGAGACAGAAAGGATTTTTTCAGGAGAGTCAATAGAACATCTTGCATCTCTACTGAAGTCCGAACAGCAGGTAGTCAGTGTTCAAATACAAATATTTCTGCAGATGGAGAATGTGGTTCCAACTCTGATACTGAAAAAGTACAAAGCTCTTTAACTCTCCAAGGGACAACTCAACATGCTGAAATGTCTCCAGATCATGATCCTGGAAATCCCGTTGAAAACTCAGCCAGTGATAAAAGTAAAATGCTTACAGAGAATAATTGTGCCCAGTGGGATGTCTTTCGAAGAAAAGATGTACCAAAGCTCTTAGAATACCTTAAAAGACATCACAATGAGTTCTCTTATATTGATGAATATCACGAGAATATGGTTCATCCAATTCTAGATCAGAGCTTCTTTCTTGACGATACTCACAAAATGAGACTAAAAGAGGAGTTCAAAATTGAACCATGGACTTTTGAGCAACATATTGGAGAAGCTGTCATCGTTCCTGCTGGATGTCCATACCAGATTAGAAGTCCTAAGTGTTGTGTTCATGTGGTATTGGAATTTGTGTCCCCTGAGAATGCTACTGAGTGTATCAAATTGGTGGATGAGGTCCGTCTACTCCGGAAAGACCATAAAGCAAAAGTAGACAAGCTGGAGGTGAACAAGATGGCCCTTAATAGCATGAGTACAGACAGCAATAAAAGAAATACGTGA 2970 0.4 MGKKSTEQEEEPLPNHLRCSRTDGRKWRCRRRVMVCLKLCETHYFQGRRRQNKEKVPDSLKLQRKTSTTTNNNQNGVVSENVEIRAKLMKKKKKKRKQNSEDAIGPSRKEKNKNVDIRIELLTMVLEREIQKRDKEKKTKKKNQKEKEEEVDEDELLYSEEELRRELPNGVMEIAPASSMHIVGSHSDVKVSSFDQRSVTLTPRYFRSRNVDRNTNVVSCGRNLKKGKRKRRCHWCQSSDSWNFIKCSNCEKEFFCMDCIKERYSETQDEVKMACPVCQGTCTCKDCFASQRRDNESKEYLDGKSRVDRILHFHYLICMLLPVLKQISEDQQTELETEAKVNGKRISDILIKQVQFGCNEETITAKQPFWIFIEVALDEFSQGSTSEEISSSMSKLPDNKNTCIASENHLSDDKASSSSNLSAISILPEWTSCNGTASVSCPPTELGGCGDSRLDLRCIFPLSWIKEMEVKAEEIVCSYDFPETLDKKSSCSLCNDKDHETNGYKQLQEAAQREDSNDNCLFYPTVLDIRHDHFEHFQKHWGKGHPVVVRDVLQSTSKLSWDPLVMFCAYLERSITRYENDKDSLEACLDWCEVEINIKQYFTGSFKYQSQKNTWHEMLKLKGWLSSQLFKEQFPAYFAEVINALPVREYMSPVSCLLNLAANLPKESSKHDTGPYVYISYDCADKEAVSVTKLCYDSYDVVNIMAHATDDPLSAEQLTKIRRLLKKHKALCQRESSKSTTDNAEDAEQKELRNMVRDRKDFFRRVNRTSCISTEVRTAGSQCSNTNISADGECGSNSDTEKVQSSLTLQGTTQHAEMSPDHDPGNPVENSASDKSKMLTENNCAQWDVFRRKDVPKLLEYLKRHHNEFSYIDEYHENMVHPILDQSFFLDDTHKMRLKEEFKIEPWTFEQHIGEAVIVPAGCPYQIRSPKCCVHVVLEFVSPENATECIKLVDEVRLLRKDHKAKVDKLEVNKMALNSMSTDSNKRNT 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1768 989 MobiDBLite consensus disorder prediction 49 110 - -
Lal5g1768 989 ProSiteProfiles JmjC domain profile. 653 957 IPR003347 -
Lal5g1768 989 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 8 982 IPR045109 GO:0032454|GO:0033169
Lal5g1768 989 MobiDBLite consensus disorder prediction 1 20 - -
Lal5g1768 989 Gene3D Cupin 525 966 - -
Lal5g1768 989 Coils Coil 953 980 - -
Lal5g1768 989 Pfam JmjC domain, hydroxylase 842 938 IPR003347 -
Lal5g1768 989 PANTHER PROTEIN B160 8 982 - -
Lal5g1768 989 MobiDBLite consensus disorder prediction 62 80 - -
Lal5g1768 989 Coils Coil 126 148 - -
Lal5g1768 989 ProSiteProfiles Zinc finger RING-type profile. 233 279 IPR001841 -
Lal5g1768 989 SMART cupin_9 634 957 IPR003347 -
Lal5g1768 989 MobiDBLite consensus disorder prediction 787 819 - -
Lal5g1768 989 Pfam WRC 14 55 IPR014977 -
Lal5g1768 989 MobiDBLite consensus disorder prediction 787 836 - -
Lal5g1768 989 ProSiteProfiles WRC domain profile. 13 57 IPR014977 -
Lal5g1768 989 MobiDBLite consensus disorder prediction 133 149 - -
Lal5g1768 989 MobiDBLite consensus disorder prediction 133 154 - -
Lal5g1768 989 SUPERFAMILY Clavaminate synthase-like 533 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1768 Lal-Chr5 19691039 19698391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1768 14 53 GRF Transcription Factor Family AT2G36400 52.500 6.53e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal5g1768 JmjC 2.1e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1768 K15601 - gmx:100802129 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1768 5 19691039 19698391 Lal11g0138 11 904992 911093 LSH
Lal16g0642 16 4097593 4114184 Lal5g1768 5 19691039 19698391 PCT
Lal5g1768 5 19691039 19698391 Lal16g0642 16 4097593 4114184 PCT