Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1720 ATGTTCACGGCTTCATCTTCCTCTACCTCACGTGAGGGACACTACAGAGGTGTTAGAAAGAGACCATGGGGTCGTTACGCTGCTGAAATACGCGATCCTTGGAAGAAGACACGTGTTTGGCTTGGTACTTTTGATACTCCTGAACAAGCTGCTCTCGCTTACGACGGTGCCGCTCGTTCCCTCCGTGGTTCTAAGGCCAAAACCAACTTCCCTCCTCCTCCTATGCCTCCTCCTACTCTCTGCCTTGACCTCAACGTTCCATCCTCTCTGCTTCCCTCTCCTCCAACTTCTCTCACTCACTTTCTCAAAGGTGTTGAATCACTCCCTCTTCCTCCTCCGCCGCCACCAACACTGCCTTTTCCTCACCACCACCGGGCTCTTGTTAGCGGCGGAGTTGGACCCCAGCTAGCTGATGGTTCTTCGACGGCGTCGTATTTGGGTCTCGTTCGACGTGGCATCCCCATCGACCTCAACGAACCTCCACCATTGTGGCTATGA 498 0.5402 MFTASSSSTSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEQAALAYDGAARSLRGSKAKTNFPPPPMPPPTLCLDLNVPSSLLPSPPTSLTHFLKGVESLPLPPPPPPTLPFPHHHRALVSGGVGPQLADGSSTASYLGLVRRGIPIDLNEPPPLWL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1720 165 CDD AP2 14 70 IPR001471 GO:0003700|GO:0006355
Lal5g1720 165 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Lal5g1720 165 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Lal5g1720 165 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Lal5g1720 165 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Lal5g1720 165 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 89 - -
Lal5g1720 165 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Lal5g1720 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 9 89 - -
Lal5g1720 165 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Lal5g1720 165 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1720 Lal-Chr5 19331164 19331661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1720 5 165 AP2-EREBP Transcription Factor Family AT1G28360 48.454 6.47e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal5g1720 AP2 5.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1720 - - gmx:100798369 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1720 5 19331164 19331661 Lal5g1720 5 19331164 19331661 ECH
Lal5g1720 5 19331164 19331661 Lal11g0202 11 1437228 1437737 LSH