Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal5g1719 | ATGGCGGGTGGCATCAATGTTAAAGATGTGAAAGAAGTGCATTTTCGGGGTGTGAGAAAAAGACCATGGGGTAGATACGCTGCTGAGATAAGAGATCCAACTAAAAAAACCCGTGTTTGGCTTGGCACCTTCGACACGCCGGAAGAAGCGGCTTCAGCCTATGACGCCGCCGCACGCAACTTTCGTGGCCCTAAGGCTAAAACTAATTTCCCTCTCCCCTCTGTCTTAGACAATCTTAACACCCCAACCTATGCCAACACCGTTGTCTCTGATTCCTCACCGTTGGATCTTAACTTGGCCCCACCCACCGTCCGTTTTCCCTTTCACTACCGCCTCGCCGCGAATCAGGGTTTGTTCTTCGATGCGGTGGGTCCTGGTTCAGGAAAAGTTTTCGGATTCACTTATAATAATAATAATCAAGTGGCAGCGGGTGAGTTCCACGTGGCATCAGGAGCGCGTAGCAATTCAGACTCATCCACCGTGATTGATCTGAATCACGATGAGCATGATCTAAAGTGTAGAAGAGTTTTTGATATTGACCTTAACAAACCTCCTCCACAAGAATATGCTTGA | 573 | 0.4817 | MAGGINVKDVKEVHFRGVRKRPWGRYAAEIRDPTKKTRVWLGTFDTPEEAASAYDAAARNFRGPKAKTNFPLPSVLDNLNTPTYANTVVSDSSPLDLNLAPPTVRFPFHYRLAANQGLFFDAVGPGSGKVFGFTYNNNNQVAAGEFHVASGARSNSDSSTVIDLNHDEHDLKCRRVFDIDLNKPPPQEYA | 190 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal5g1719 | 190 | Gene3D | AP2/ERF domain | 13 | 72 | IPR036955 | GO:0003700|GO:0006355 | |
Lal5g1719 | 190 | PRINTS | Ethylene responsive element binding protein signature | 15 | 26 | IPR001471 | GO:0003700|GO:0006355 | |
Lal5g1719 | 190 | PRINTS | Ethylene responsive element binding protein signature | 37 | 53 | IPR001471 | GO:0003700|GO:0006355 | |
Lal5g1719 | 190 | Pfam | AP2 domain | 14 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Lal5g1719 | 190 | SUPERFAMILY | DNA-binding domain | 14 | 72 | IPR016177 | GO:0003677 | |
Lal5g1719 | 190 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE | 10 | 79 | - | - | |
Lal5g1719 | 190 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE | 88 | 172 | - | - | |
Lal5g1719 | 190 | ProSiteProfiles | AP2/ERF domain profile. | 14 | 71 | IPR001471 | GO:0003700|GO:0006355 | |
Lal5g1719 | 190 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 88 | 172 | - | - | |
Lal5g1719 | 190 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 10 | 79 | - | - | |
Lal5g1719 | 190 | SMART | rav1_2 | 14 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Lal5g1719 | 190 | CDD | AP2 | 14 | 71 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal5g1719 | Lal-Chr5 | 19315325 | 19315897 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal5g1719 | 11 | 121 | AP2-EREBP Transcription Factor Family | AT5G44210 | 58.537 | 3.12e-37 | 126 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Lal5g1719 | AP2 | 6e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal5g1719 | K09286 | - | gmx:100170742 | 204.912 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal5g1719 | 5 | 19315325 | 19315897 | Lal5g1719 | 5 | 19315325 | 19315897 | ECH | |
Lal9g0526 | 9 | 3521335 | 3521907 | Lal5g1719 | 5 | 19315325 | 19315897 | ECH | |
Lal2g0593 | 2 | 3553399 | 3553986 | Lal5g1719 | 5 | 19315325 | 19315897 | ECH | |
Lal20g0345 | 20 | 2793038 | 2793670 | Lal5g1719 | 5 | 19315325 | 19315897 | ECH | |
Lal11g1443 | 11 | 17792456 | 17793061 | Lal5g1719 | 5 | 19315325 | 19315897 | ECH | |
Lal5g1719 | 5 | 19315325 | 19315897 | Lal11g0203 | 11 | 1451601 | 1452254 | LSH |