Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1719 ATGGCGGGTGGCATCAATGTTAAAGATGTGAAAGAAGTGCATTTTCGGGGTGTGAGAAAAAGACCATGGGGTAGATACGCTGCTGAGATAAGAGATCCAACTAAAAAAACCCGTGTTTGGCTTGGCACCTTCGACACGCCGGAAGAAGCGGCTTCAGCCTATGACGCCGCCGCACGCAACTTTCGTGGCCCTAAGGCTAAAACTAATTTCCCTCTCCCCTCTGTCTTAGACAATCTTAACACCCCAACCTATGCCAACACCGTTGTCTCTGATTCCTCACCGTTGGATCTTAACTTGGCCCCACCCACCGTCCGTTTTCCCTTTCACTACCGCCTCGCCGCGAATCAGGGTTTGTTCTTCGATGCGGTGGGTCCTGGTTCAGGAAAAGTTTTCGGATTCACTTATAATAATAATAATCAAGTGGCAGCGGGTGAGTTCCACGTGGCATCAGGAGCGCGTAGCAATTCAGACTCATCCACCGTGATTGATCTGAATCACGATGAGCATGATCTAAAGTGTAGAAGAGTTTTTGATATTGACCTTAACAAACCTCCTCCACAAGAATATGCTTGA 573 0.4817 MAGGINVKDVKEVHFRGVRKRPWGRYAAEIRDPTKKTRVWLGTFDTPEEAASAYDAAARNFRGPKAKTNFPLPSVLDNLNTPTYANTVVSDSSPLDLNLAPPTVRFPFHYRLAANQGLFFDAVGPGSGKVFGFTYNNNNQVAAGEFHVASGARSNSDSSTVIDLNHDEHDLKCRRVFDIDLNKPPPQEYA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1719 190 Gene3D AP2/ERF domain 13 72 IPR036955 GO:0003700|GO:0006355
Lal5g1719 190 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Lal5g1719 190 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Lal5g1719 190 Pfam AP2 domain 14 63 IPR001471 GO:0003700|GO:0006355
Lal5g1719 190 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Lal5g1719 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 10 79 - -
Lal5g1719 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 88 172 - -
Lal5g1719 190 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Lal5g1719 190 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 88 172 - -
Lal5g1719 190 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 79 - -
Lal5g1719 190 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Lal5g1719 190 CDD AP2 14 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1719 Lal-Chr5 19315325 19315897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1719 11 121 AP2-EREBP Transcription Factor Family AT5G44210 58.537 3.12e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal5g1719 AP2 6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1719 K09286 - gmx:100170742 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1719 5 19315325 19315897 Lal5g1719 5 19315325 19315897 ECH
Lal9g0526 9 3521335 3521907 Lal5g1719 5 19315325 19315897 ECH
Lal2g0593 2 3553399 3553986 Lal5g1719 5 19315325 19315897 ECH
Lal20g0345 20 2793038 2793670 Lal5g1719 5 19315325 19315897 ECH
Lal11g1443 11 17792456 17793061 Lal5g1719 5 19315325 19315897 ECH
Lal5g1719 5 19315325 19315897 Lal11g0203 11 1451601 1452254 LSH