Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1716 ATGGAGGCTGAAGCAGAGAACAATACACAGAAGAGGGATGAAGAAGGTGACAATAGCAATGAGAATAACAATGGAAGTAACAGCAAAATCGCGAATTCCAATGAGGGTCAGAGCAGGACCAAGCGTCAAATGAAAACCCCATTTCAGCTTGAAACTCTAGAGAAAACTTATGCAATGGAGACTTACCCCTCGGAAGAGACGAGGGTGGTGCTGTCAGAGAAGTTGGGGCTGTCAGATCGGCAGTTGCAGATGTGGTTCTGTCACCGGAGGTTGAAGGACAAGAAGGACTCACAGCAAAAGAAGCAGCGGAAAACGGTGGTGGAGGCAACATTGCCGCATTCCCCCATAGATGACATCAAGTTGGGTCATGAACCTGGTAATGAATATGGGTCCGGGTCGGGTTCTAGCTCCAGCCCTTTTACCCGTCCGGAGTTGAGGAATGTGGTGCCCCGGGGACTGCCTGGGCACTATGAATCGCCACAGACTATAATGAAGCTTAGAGCAATTGCGTGTGTGGAGGCACAGTTAGGGGAGCCATTGAGGGAGGATGGACCTAGTCTCGGCATAGATTTTGATTCATTGCCACCAGATGCTTTTGGGGCACCAATAGCTATTACAGAACAGCAGAAGCGGCCTAGTCTTGCCTACGACAACAAAATATATGGACACAATGTTCGAACAAATAATGCTATCGCAAGGACATTCCCTGAATATCCGTCATTTCTTCCAAAGCAGCCAGGCATTAGGGCTGATGCTTTTGGTCAATTTGGCCCAACTCATTTACATGACCCAATGGAGGGCCCTACTAGAACTCCTTTACCCCTTGAAAATGAGCTGCTACCCAGAATTCATTCTACCCAAAGTCATTCTTCTCGTGTTTGCCAACCAGACAAGCATGTGATTCCCTATATATCTCCTCTAGACAATGATGTTGCCTTCCGAAGAGAATCTTACACAAACATAGCGGATGCTGGAACAAGTACCCACTTTTCTGAACACCCACTTGCTGGACAAGATAATTATTACGCTTTACCTGGTGGACAAGTTTTACATAATGACGCAGTGTTGCAGATGGAGAAGAAAAAAGGGAGTGACGATACAAGAGTTGCAAGGGAAGTTGAAGCCTATGAGACAAGTATCAAGAAAGAGCTTGAGAAACAAGATAATATGAGACGAAAGAATGATGACCGATTGAGGAAAGAAATGGAGAGACAAGAACGTGAAAGGAAAAAAGAAGAAGAGAGGTTGACACGTGAGAGACAACGAGAAGAGGAAAGATCAAAGCGTGAGCAAAAACGGGAAATGGAACGAAGGGAAAAGTTTTTGTTGAAAGAAAGTGTAAAAGCTGAGAAGAGGAGGCAAAAAGAAAAGCTTCGCAGAGAGAAAGAGACGGAGAGAAGGAAGGCTGCCCTTGAAAAGGCAGCTGCTCGTAGAATAGCTAAAGAATCTATAGAGCTTATTGATGATGAACAGCTGGAATTGATGGAGTTGGCTGCAGCAAGCAAGGGACTATCCTCTATCATAAATCTTGATCTTGATACTTTGCAAAACCTTGAGTCATTTAGGGATTCATTGTGTGTTTTCCCACCTCTGGGTGTAAAGCTGAGAAAGCCATTTGGTATCCAACCCTGGATCAACTCAGAGCAGAATGTTGGAAACCTTCTCATGGTTTGGAGATTCTTGATTACTTTTGCTGATGTTCTTGAGTTATGGCCTTTTACACTTGACGAGCTCTTACAAGCATTTCATGACTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAAGGTGATAATTAAAGACATTGAAGATGTTGCTAGGACACCTTCTACAGGGTTAGGAGTGAACCAAAATGGAGCTTCTAACCCTGGAGGTGGCCATCCAGAGCTTGTGGAAGGAGCATATTCATGGGGCTTTGACATACGAAATTGGCAGAAGAACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAATTAGCACTATCTGCTGGATTTGGTCCACAGTTGAAGAAAAAAAATATTATGTGGTCTTATGCAAACGATAAAAGCGAGGGAAGAAATGGTGAAGATATCATCTCCACACTTCGTAATGGTTCAGCAGCTGAAAGTGCAGTGGCAAAAATGCATGAGAAAGGTCTACTAGGTCCTCGGAGATCAAGGCACCGGTTAACTCCTGGAACAGTTAAATTTGCAGCATTTCATGTTCTCTCGCTGGAGAGTAGCAAGGGTCTGACAGTATTAGATCTTGCTGAAAAAATTCAGAAATCTGGTCTCCGGGACCTGACGACCAGCAAGACACCTGAAGCATCGATTTCTGTGGCTTTAACAAGAGACACAAAGCTTTTTGAAAGAATAGCACCATCAACATATTGTGTGCGATCTGCCTTTAGAAAGGATCCTGCTGATGCTGAGTCTATTCTTTCGGAAGCAAGAAAGAAAATACAAATATTTGAAAACGGGTTTCTCTCTGGTGAATATGCCGATAATGTTGAAAGAGAAGATTCAGAAAGTGAAGTTGATGAGGATCCTGAAGTCGATGATTTAGTAAATCCTTTAACTGTCCAAAATTCTGAACAATGTGATGACACAAATGTTTGCTCATTAGATGTAAAAGTAAATTTGGCTCATGATGTTGGACTTATTAACAATGAGTCTAATAGAGATCTGCCTTGTTTTCCTGAGAATGGTTCCAAGGATGCTGATTGTCCCACTTCTGTTTCCAGACAACCTTGTGAAGATTTGAATGCAGAAAATCTTAATGAAGATAATATGGAAATTGATGAAAGCAAGTCTGGAGAGTCCTGGGTTCAAGGGCTTACTGAAGGAGAATACTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTTTTGCATTGGTTGGTGTGGCTAATGAAGGGAATTCAATCCGTATCGTTCTTGAGGATCGATTGGAAGCCGCAAATGCTCTGAAGAAGCAAATGTGGGCTGAAGCACAGATAGATAAATTTCGTCTAAAAGATGATATTATTAATCAATCAGATTTTCCACCACTTATTGGGAATAAAGTTGAAACACAATATACATATCCTGCTGTGGTGGGTAACCAAAGTCTATTGCTTGAAATTAATTTTAGCAATATGAATAATGAGGCATCACCCAACACTGCAGAAAACCAAAAGGCAATATCAGTTTCACACAGGCTACCTGTGGAAAGGTTCTCATCGTTTCAAGATTTATGCCCATGGACAGGTTCAGACAACCCTCAGACTCAGGTATCTGCACCATATTCAAAAAGGTCACGTTCACAGTTGAAATCCTATATTTCCCACATGGTAGAGGAGATGTTTGTCTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACATAATAGATATTGGCTGTTAGTTGCATCTGCTTCTAGCAATGATCCTGGTTCTGGCAGGATCTTTGTTGAATGTCATGCTGATGGCAATTGGAGGCTTATTGATTCAGAAGAGGCCTTTGATATTCTTTTGACATCACTGGATTCGCGCGGAATCAGGGAATCTCATTTGCGTTTAATGTTGAAAAAGATTGAGACTTCTTTTAAAGAAGATGTTCGAAAGAATAAACAATGCACCAAAATTGAGTGTCCTAGCAGTACTCTTTATAGCCTGAGCTCTGATACATCAGAAATTTCACCATCTTTCAAAATTGAGCTTGGGAAAAATGAGAGCGAGAAGATAGCTGCCTTAAGAAGATATCAAGATTTTCAAAAGTGGATGTGGAAAGAATGCTATAAATCATCAATATTATGTGCAAAGAAATCTGGGGTACAGAGATGCAAACCTCAGGTGGACATTTGTGATATCTGTTTGAACCCTTGTTTTGTTGAAGACTCCCATTGCAATTCCTGCCACTGTTCTTTTCCCGCAAATAATGGATTTAATTTTTCAAAACATGCATTTCAATGTGAAGACAAGTTATCCAAAGATATTTGTATTTCGGAATCTTCCCTTCCTTTGCCAACAAGATTGTTTAAGTACCTGTTAGCATGTATTGAGGTGTCTGTTCTGCCTGAAGCATTTGGAACAATTTGGACAGATGATATTAGGAAGCACTGGGGCATGAAGTTGAGCAAATCATCTTCTGTTAAGGAACTTTTACAGATATTGACCATATTTGAGAGAGCAATACGACGAGATTTTCTATCGTCAAACTTCGCTACAACTGACGAATTGTTGGGATTGAATAGCATGTCAGAAAGTGCTGCACATGCTTCTACTGATCCTGAATCTATTGCTGTACTTCCATGGGTTCCACAAACTACTGCAGCATTGTCTCTCAGACTTTTTGAGATTGATTCGTCCATCAGCTATGTAAAGCCTGTGAAACCCGAGCCTCGTGAGGAGAAAGAAGCAAAAGAATACACAAAGCTCCCTTCAAGATATACTCCCTTCAAATTTAAGGAGGTTGAACCAGCAGAATTAGACCATGATGAAATCCTTAAAGATAAATCTGCTCCTAAGAAAGTTGTGCGCAGTGGCAATAAACGTGGACGAGGGTCTAATGATCAAGGACGGGGTAAAAAGCTGTCTAAAAGACCTTACAATTCCAAACGAAATATTCCCCGTCGTAACGTTCAGGTCACTGAGAATCTAAGCCTCAAATTAGAACAACAGCCAGGACGAGAAACACAAGGTCAAGCTGGTGGACGAGGGCGCCGAACGGTCAGGAAAAGGAGGGTTGAAAAGAAGGCTGTTGAAGATTTGTTGCTGGGCAATACAGAAGCTGGTCATAGCTCGGCAATAGAGATGAGTAAAGTACCATTGAGAAGCATGGATGTGGAATGGGAAGTTGAAAAGGCAAGTCCTATAACTTGTGTCGACATGGATGTTGTTGATAACAGTAATAGTACTGAAGAGGTGGAATCTGATGATAATATCGAAGCAGTGGAGTATGATAGAGGAAAGTGGGAGATAGGTATTAATAATGTCCCTCACAACAGATGGAGTAATGATTTAGTTGGAATGAGTGATGAAGATGTGGATGCTTCTGAAGATAATGAAGAGGAGGATTCAGAGGGAGATGTTATGAGTGAGGAGGGTTCAGATGGCATGGCAAATAGAGTTGTAGTAAATGAAGAAGACTCAGACTCTTCTGTCTCGCAACATTCTTCAGATTAG 5157 0.4179 MEAEAENNTQKRDEEGDNSNENNNGSNSKIANSNEGQSRTKRQMKTPFQLETLEKTYAMETYPSEETRVVLSEKLGLSDRQLQMWFCHRRLKDKKDSQQKKQRKTVVEATLPHSPIDDIKLGHEPGNEYGSGSGSSSSPFTRPELRNVVPRGLPGHYESPQTIMKLRAIACVEAQLGEPLREDGPSLGIDFDSLPPDAFGAPIAITEQQKRPSLAYDNKIYGHNVRTNNAIARTFPEYPSFLPKQPGIRADAFGQFGPTHLHDPMEGPTRTPLPLENELLPRIHSTQSHSSRVCQPDKHVIPYISPLDNDVAFRRESYTNIADAGTSTHFSEHPLAGQDNYYALPGGQVLHNDAVLQMEKKKGSDDTRVAREVEAYETSIKKELEKQDNMRRKNDDRLRKEMERQERERKKEEERLTRERQREEERSKREQKREMERREKFLLKESVKAEKRRQKEKLRREKETERRKAALEKAAARRIAKESIELIDDEQLELMELAAASKGLSSIINLDLDTLQNLESFRDSLCVFPPLGVKLRKPFGIQPWINSEQNVGNLLMVWRFLITFADVLELWPFTLDELLQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGVNQNGASNPGGGHPELVEGAYSWGFDIRNWQKNLNQLTWPEIFRQLALSAGFGPQLKKKNIMWSYANDKSEGRNGEDIISTLRNGSAAESAVAKMHEKGLLGPRRSRHRLTPGTVKFAAFHVLSLESSKGLTVLDLAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRSAFRKDPADAESILSEARKKIQIFENGFLSGEYADNVEREDSESEVDEDPEVDDLVNPLTVQNSEQCDDTNVCSLDVKVNLAHDVGLINNESNRDLPCFPENGSKDADCPTSVSRQPCEDLNAENLNEDNMEIDESKSGESWVQGLTEGEYSDLSVEERLNALFALVGVANEGNSIRIVLEDRLEAANALKKQMWAEAQIDKFRLKDDIINQSDFPPLIGNKVETQYTYPAVVGNQSLLLEINFSNMNNEASPNTAENQKAISVSHRLPVERFSSFQDLCPWTGSDNPQTQVSAPYSKRSRSQLKSYISHMVEEMFVYRSLPLGQDRRHNRYWLLVASASSNDPGSGRIFVECHADGNWRLIDSEEAFDILLTSLDSRGIRESHLRLMLKKIETSFKEDVRKNKQCTKIECPSSTLYSLSSDTSEISPSFKIELGKNESEKIAALRRYQDFQKWMWKECYKSSILCAKKSGVQRCKPQVDICDICLNPCFVEDSHCNSCHCSFPANNGFNFSKHAFQCEDKLSKDICISESSLPLPTRLFKYLLACIEVSVLPEAFGTIWTDDIRKHWGMKLSKSSSVKELLQILTIFERAIRRDFLSSNFATTDELLGLNSMSESAAHASTDPESIAVLPWVPQTTAALSLRLFEIDSSISYVKPVKPEPREEKEAKEYTKLPSRYTPFKFKEVEPAELDHDEILKDKSAPKKVVRSGNKRGRGSNDQGRGKKLSKRPYNSKRNIPRRNVQVTENLSLKLEQQPGRETQGQAGGRGRRTVRKRRVEKKAVEDLLLGNTEAGHSSAIEMSKVPLRSMDVEWEVEKASPITCVDMDVVDNSNSTEEVESDDNIEAVEYDRGKWEIGINNVPHNRWSNDLVGMSDEDVDASEDNEEEDSEGDVMSEEGSDGMANRVVVNEEDSDSSVSQHSSD 1718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1716 1718 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Lal5g1716 1718 ProSiteProfiles DDT domain profile. 548 607 IPR018501 -
Lal5g1716 1718 ProSiteProfiles HARE-type HTH domain profile. 730 799 IPR007759 GO:0006355
Lal5g1716 1718 Gene3D - 22 100 - -
Lal5g1716 1718 PANTHER HOMEOBOX DOMAIN PROTEIN 7 1718 - -
Lal5g1716 1718 MobiDBLite consensus disorder prediction 1 51 - -
Lal5g1716 1718 Pfam Homeodomain 39 95 IPR001356 GO:0003677
Lal5g1716 1718 MobiDBLite consensus disorder prediction 92 107 - -
Lal5g1716 1718 MobiDBLite consensus disorder prediction 1704 1718 - -
Lal5g1716 1718 SMART testlast3 548 607 IPR018501 -
Lal5g1716 1718 MobiDBLite consensus disorder prediction 20 50 - -
Lal5g1716 1718 MobiDBLite consensus disorder prediction 1532 1557 - -
Lal5g1716 1718 MobiDBLite consensus disorder prediction 129 143 - -
Lal5g1716 1718 MobiDBLite consensus disorder prediction 1659 1718 - -
Lal5g1716 1718 CDD homeodomain 39 90 IPR001356 GO:0003677
Lal5g1716 1718 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1116 1189 IPR028941 -
Lal5g1716 1718 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 935 978 IPR028942 -
Lal5g1716 1718 Pfam HB1, ASXL, restriction endonuclease HTH domain 730 798 IPR007759 GO:0006355
Lal5g1716 1718 Coils Coil 395 475 - -
Lal5g1716 1718 Pfam DDT domain 550 604 IPR018501 -
Lal5g1716 1718 MobiDBLite consensus disorder prediction 1 19 - -
Lal5g1716 1718 Coils Coil 373 393 - -
Lal5g1716 1718 MobiDBLite consensus disorder prediction 1490 1570 - -
Lal5g1716 1718 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 7 1718 IPR044977 GO:0006357
Lal5g1716 1718 MobiDBLite consensus disorder prediction 381 437 - -
Lal5g1716 1718 SUPERFAMILY Homeodomain-like 26 96 IPR009057 -
Lal5g1716 1718 MobiDBLite consensus disorder prediction 1670 1690 - -
Lal5g1716 1718 SMART HOX_1 38 100 IPR001356 GO:0003677
Lal5g1716 1718 MobiDBLite consensus disorder prediction 92 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1716 Lal-Chr5 19283763 19294601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1716 1 1571 Homeobox Transcription Factor Family AT1G28420 48.675 0.0 1254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lal5g1716 WSD 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1716 - - gmx:100777465 2285.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1716 5 19283763 19294601 Lal5g1716 5 19283763 19294601 ECH
Lal5g1716 5 19283763 19294601 Lal3g0097 3 586951 597782 LSH
Lal5g1716 5 19283763 19294601 Lal11g0207 11 1479822 1489647 LSH
Lal15g0643 15 4406389 4417132 Lal5g1716 5 19283763 19294601 PCT
Lal5g1716 5 19283763 19294601 Lal15g0643 15 4406389 4417132 PCT