Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1708 ATGGCTTCTTCAAACAGACACTGGCCAAGCATGTTCAAGTCCAAGCCCAAGCCTTGCAACCCTCATCACCACCAATGGCAACATGACATCACTTCTTCTCTCATCTCAAATGCTTGCCACAGAACCCCTTACACTTCAGTGGGATGTGAGGAGAGAAGTCCAGAACCAAAGCCAAGGTGGAACCCAAAACCTGAGCAAATTCGGATACTTGAAGCAATATTCAACTCTGGAATGGTTAATCCTCCAAGAGATGAAATAAGAAAGATAAGGGCACAGTTGCAAGAGTATGGTCAAGTTGGTGATGCTAATGTCTTCTACTGGTTCCAGAACCGCAAATCAAGGAGCAAGCACAAACTCAGACAACAACTCCATAACTCAAAGAACAATTACCAAAACATTAACCCACCCGAACAACAACATCAAAAACCAGACACTGTTTCTCATCAACTCTCTCAAGTCACTGCACCTTCATCTTCTTCCTCTTCCTCTGATCAGAAATCCTCACGACAAGAAGTAATACAACCTAAGGTATTCTCCATTGGCTTATCTAGGGTCAGTGATGTTGTGCTGCCTAATTCTCCAACTGTTTCTGTGAACCAAAACTATTTACCACCTGCACCATTATCTGAGGGGTTCTTCTTCCCAATGCAACATCAGGGACAAGGACTATCACCTAATAATAATAATAATACCATATCTTCATCATCACAAGGATTTTGCTTTTCTGAGCTTTCTAGTGTTGTTCAATCTCAACAACCACATGGTCAGCATAATGTTGGTCCTTGCACCAGTCTCTTACTGAGTGAGATAATGAACCATGGTGCAGCTTCTTCCAAAAGGGATCAAGTTCAAGACAAGAATGTGAAAGTAATTCATCCTTATTCACACCTCAGTTTCTGTGTTACTCCTACTACCGCACTTCAAACCGCCACCGTTGCCCCTCCTTCCATCACAACCACCACAGTTACTGTTCCATCCCCCATAAATTTCTCTCAACTTCAAGGCATTGGAGATGCATGTGTAACTCCGAAATCAACGGTGTTCATTAATGAAGTGGCATTTGAAGTAGCAGTTGGACCTTTCAACGTTCGAGAGGCCTTTGGTGATAATGCAATGCTAATCCACCCTAATGGCCACCCTGTTCCCACAAACCAGTGGGGTCTCACCCTTCACTCACTCCACCATGATAATGTAGGAAAGCTTAAAGCTGAAGGAGCTATTATATTAGTGAATGGTTTGTTAGATATAGTGTATTCTATGTCTCTATTTCGACCAGTCTCTCTCACTTTTCAGTTAGCACCCTTTTTATTCTTAGCTTTGTCTCTATCTGCGTAA 1335 0.4255 MASSNRHWPSMFKSKPKPCNPHHHQWQHDITSSLISNACHRTPYTSVGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRQQLHNSKNNYQNINPPEQQHQKPDTVSHQLSQVTAPSSSSSSSDQKSSRQEVIQPKVFSIGLSRVSDVVLPNSPTVSVNQNYLPPAPLSEGFFFPMQHQGQGLSPNNNNNTISSSSQGFCFSELSSVVQSQQPHGQHNVGPCTSLLLSEIMNHGAASSKRDQVQDKNVKVIHPYSHLSFCVTPTTALQTATVAPPSITTTTVTVPSPINFSQLQGIGDACVTPKSTVFINEVAFEVAVGPFNVREAFGDNAMLIHPNGHPVPTNQWGLTLHSLHHDNVGKLKAEGAIILVNGLLDIVYSMSLFRPVSLTFQLAPFLFLALSLSA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1708 444 ProSiteProfiles 'Homeobox' domain profile. 53 118 IPR001356 GO:0003677
Lal5g1708 444 SMART HOX_1 55 122 IPR001356 GO:0003677
Lal5g1708 444 MobiDBLite consensus disorder prediction 1 25 - -
Lal5g1708 444 SUPERFAMILY Homeodomain-like 53 122 IPR009057 -
Lal5g1708 444 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 396 - -
Lal5g1708 444 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 396 IPR044557 GO:0003700|GO:0050793
Lal5g1708 444 MobiDBLite consensus disorder prediction 127 170 - -
Lal5g1708 444 CDD homeodomain 56 118 IPR001356 GO:0003677
Lal5g1708 444 Gene3D - 57 124 - -
Lal5g1708 444 Pfam Homeodomain 57 117 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1708 Lal-Chr5 19250889 19253104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1708 1 395 Wox Gene Family AT2G33880 43.059 3.34e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lal5g1708 Homeodomain 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1708 - - cam:101490093 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1708 5 19250889 19253104 Lal5g1708 5 19250889 19253104 ECH