Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1707 ATGGAGTTACCATTAAATGAGAATGACTCACAAGACATGGTGATATACCAAGTTCTAAACGAGGCAAATGCTATGAGCAACACATTTAACCCTCAAAAGCACAACCATGAAGCTCTTAGTTCTTCCCAACATGGGCTAGAACCGTCAAGGGACATCACCAAGAAACACTATAGAGGGGTGAGGCGCCGCCCTTGGGGGAAGTATGCGGCGGAGATTCGTGACTCAGCTCGTCATGGAGCAAGGGTATGGCTTGGAACGTTTCAAACTGCTGAAGAGGCTGCTATAGCTTATGATAGAGCTGCTTTCAAGATGAGAGGTTCTAAGGCTTTGCTTAACTTTCCACCTGAACTTGTTGCTGTTGCTTCTTCTATTAACTTCTCTTCTAAACTTCATTTCAAAAATAATCATGATTCTTCTGATTCATGTGCTAGTTCAAATCCCATTACTATGGACAAATTCTAG 462 0.4264 MELPLNENDSQDMVIYQVLNEANAMSNTFNPQKHNHEALSSSQHGLEPSRDITKKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFQTAEEAAIAYDRAAFKMRGSKALLNFPPELVAVASSINFSSKLHFKNNHDSSDSCASSNPITMDKF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1707 153 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Lal5g1707 153 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
Lal5g1707 153 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 2 125 - -
Lal5g1707 153 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Lal5g1707 153 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Lal5g1707 153 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677
Lal5g1707 153 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Lal5g1707 153 PANTHER DNA-BINDING DOMAIN 2 125 IPR044808 GO:0003700|GO:0009873
Lal5g1707 153 Gene3D AP2/ERF domain 55 115 IPR036955 GO:0003700|GO:0006355
Lal5g1707 153 CDD AP2 55 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1707 Lal-Chr5 19240285 19240746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1707 3 114 AP2-EREBP Transcription Factor Family AT5G47220 51.969 1.05e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal5g1707 AP2 8.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1707 K13433 - gmx:100811533 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1707 5 19240285 19240746 Lal5g1707 5 19240285 19240746 ECH