Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1696 ATGGAATCTCAAAGAAAGACAAACCACAAAGACGACCACAACAGAATCGTCACCGATTCTCCGCCACCGTTCTCCAATCTCTCCCCACACGACATCTACCAAATGCTTCAACCATTCCATCATGACCAACTCCTCAACCTCCTCCACACCGCCGCTATCCGCCACACCGACGTCCTCCTCTCGATTCGTGACTTCTCCGACCGCGACACATCTTTCCGTAGACTCTACGTCCGGTCCCTCGGCGCCGAAACCACCTCCGAAACCCTCCACCGTGTCTTTTCCCCATTCGGCGAGATCGAGGAGGCTATTGTGATCACCGATAAATCAACAGGGAGGTCCAAGGGTTTCGGCTTCGTAACGTTCAAGCACTTGGATGGTGCATACTTGGCTCTGAAGAATCCGAGTAAGAGAATCAATGGACGAATGACGCTTACTCATCTTGCTTCTGCTGGGGTTTCAATTTGGAATGATGACGTTTCTTCTAGAAAGATCTTTGTGGCGAATATTCCGTTTGTGATTCCTCCTGGTAAGTTGTTGAATCATTTTTTAAGGTATGGTGAGGTGGAGGAAGGACCTCTTGGTTTTGATAGAGCGTGTGGAAGAGAAAAGGGGTTCGCTTTTTTCATTTATAAGACGGAGGAGGGAGCGAATGCCGCAATTCGTGAACCTTTAAAGGTAATTGATGGCTATAAAATGCATTGTAGATTATCTGTTGAGTATAAGAAGCTAAATAAAACACCACCTCAAATGATGGCACCACAGTATGGTGGATATGGTGGTGGATTTTATCTGGATCCGCGTCTTACTACATTGTATGTTCCTCCTCCTATGGTGCTGGTGCCGCAGTTTGGTCATACCAGTGGTGGTGGTGGTGGTTGTGGCCATGGTAGTGACAGTAGCAGCAATGTTGATCCAAGGCGTACTTCTCCACTTCCTCCAAATTCGGCTGTTGGAGTTCCTGCAACTGCAAGTGGATCTCAGTCTCAAGTTGCTTCTTTTTGCTTTGTTGGTTTGCTTTGTGTGCTTGTGGTGGTTTGTGACGGCTTCTCGGATGCTAATGCTTTAAATGGTTGTGCCGATTTCGTGCTTGCAGTTGCAGACAATGAAATATTTGGTTTTGGTTTCATGGACTGCTGTAAATTTGTTGCTGTTTCGCTACTCCATGCTTCTATGGGCAGCGCATCAACCAGCAAGAGCGCCGGCCTCTTCTGGAATGCCTTTGATTGCACTGGTCATCATACTCAACCCACTCTATATCTCGGCCAAACTACCCAAAGGCCGAAAAAGTTCAACAAGGCTATGTCCACCATGGCAACTAAGCTGGCAGGATTGGACAGATCAGACATGATGGTTGACGACGGACCCATGTCTACCTCCTTCACATAG 1386 0.4755 MESQRKTNHKDDHNRIVTDSPPPFSNLSPHDIYQMLQPFHHDQLLNLLHTAAIRHTDVLLSIRDFSDRDTSFRRLYVRSLGAETTSETLHRVFSPFGEIEEAIVITDKSTGRSKGFGFVTFKHLDGAYLALKNPSKRINGRMTLTHLASAGVSIWNDDVSSRKIFVANIPFVIPPGKLLNHFLRYGEVEEGPLGFDRACGREKGFAFFIYKTEEGANAAIREPLKVIDGYKMHCRLSVEYKKLNKTPPQMMAPQYGGYGGGFYLDPRLTTLYVPPPMVLVPQFGHTSGGGGGCGHGSDSSSNVDPRRTSPLPPNSAVGVPATASGSQSQVASFCFVGLLCVLVVVCDGFSDANALNGCADFVLAVADNEIFGFGFMDCCKFVAVSLLHASMGSASTSKSAGLFWNAFDCTGHHTQPTLYLGQTTQRPKKFNKAMSTMATKLAGLDRSDMMVDDGPMSTSFT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1696 461 MobiDBLite consensus disorder prediction 1 25 - -
Lal5g1696 461 CDD RRM_RBM24_RBM38_like 73 148 - -
Lal5g1696 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 243 IPR000504 GO:0003723
Lal5g1696 461 MobiDBLite consensus disorder prediction 293 309 - -
Lal5g1696 461 Gene3D - 64 144 IPR012677 -
Lal5g1696 461 Gene3D - 154 245 IPR012677 -
Lal5g1696 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 229 IPR000504 GO:0003723
Lal5g1696 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 141 IPR000504 GO:0003723
Lal5g1696 461 SUPERFAMILY RNA-binding domain, RBD 157 263 IPR035979 GO:0003676
Lal5g1696 461 SMART rrm1_1 163 235 IPR000504 GO:0003723
Lal5g1696 461 SMART rrm1_1 74 146 IPR000504 GO:0003723
Lal5g1696 461 MobiDBLite consensus disorder prediction 1 17 - -
Lal5g1696 461 MobiDBLite consensus disorder prediction 288 319 - -
Lal5g1696 461 PANTHER GEO13361P1-RELATED 10 322 - -
Lal5g1696 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 166 IPR000504 GO:0003723
Lal5g1696 461 PANTHER UBP1-ASSOCIATED PROTEIN 2C 10 322 - -
Lal5g1696 461 SUPERFAMILY RNA-binding domain, RBD 60 143 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1696 Lal-Chr5 19165353 19173769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1696 145 239 C2H2 Transcription Factor Family AT2G19380 32.632 2.08e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1696 K12741 - gmx:100816590 284.263