Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1695 ATGGCTTACCAATATAATTATAAGTCCACTTGTGGTACAAATGGTGTTTCATCAAAAGGTGGGTTACCTTCAATACCATCATCATATTCATTGGTTTTGGATGTTGAGAAAGGAGAGTTAGTGAAATCCTCTGGAAGAATATTGAGGAAGAAAGATATTTCTGAGGCCAAATCTTTAGCTGCTTTGAAGAAACATTGTGATGCTGAGAGAAGAAGAAGAGAAAGAATTAATGGTTATCTTGCAACACTACGTTCTCTTGTGCCTCCTACTACAAAGACGGATAAAGCCACAATACTAGCTGAAGTTATTAGCCAAATGAAGGAATTGAAGAAGAATGCAATGGAAGCAAGCAAAGGTTTTCTAATCCCAACAGATTATGATGAAGTGAAAGTTGAACGATATGATAATAAAAATGGAGATGGATCAATTTCTTACAAGGCATCAATCTGTTGTGATGATAGACCTGAACTACTATCTGACCTAAGACAAACTCTTGATACCCTACAACTACATTTGGTGAAGACAGAACTTTCAACTTTGGGAGAAAGGGTTAAGAATGTTTTTGTCTTTACATGCTGCAAAGAGGACATTAATATTCATATTGAAACATGTCAACTTATTGCAATTTCTGTTCGTCAGGCACTAAGTTCTGTTCTTAATAAAGCTTCTACTTCACAAGATTATTCACTACCGCCATGCAAGAAACCAAGACTTTGCCTTCTTGAAACATCTACTTCCTCATGCAACCATGAATTTTGTTCATTTTGA 768 0.3581 MAYQYNYKSTCGTNGVSSKGGLPSIPSSYSLVLDVEKGELVKSSGRILRKKDISEAKSLAALKKHCDAERRRRERINGYLATLRSLVPPTTKTDKATILAEVISQMKELKKNAMEASKGFLIPTDYDEVKVERYDNKNGDGSISYKASICCDDRPELLSDLRQTLDTLQLHLVKTELSTLGERVKNVFVFTCCKEDINIHIETCQLIAISVRQALSSVLNKASTSQDYSLPPCKKPRLCLLETSTSSCNHEFCSF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1695 255 CDD bHLH_AtAIG1_like 55 131 - -
Lal5g1695 255 CDD ACT_UUR-ACR-like 148 219 - -
Lal5g1695 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 112 IPR036638 GO:0046983
Lal5g1695 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Lal5g1695 255 SMART finulus 66 115 IPR011598 GO:0046983
Lal5g1695 255 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Lal5g1695 255 PANTHER DNA BINDING PROTEIN-LIKE 8 248 - -
Lal5g1695 255 Coils Coil 99 119 - -
Lal5g1695 255 PANTHER TRANSCRIPTION FACTOR BHLH30 8 248 IPR045847 GO:0003700|GO:0006355
Lal5g1695 255 Gene3D - 56 118 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1695 Lal-Chr5 19159230 19163922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1695 48 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.005 3.63e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal5g1695 HLH 4.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1695 - - gmx:100804756 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1695 5 19159230 19163922 Lal5g1695 5 19159230 19163922 ECH