LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal5g1683	ATGAATCTGAGCATGTCAACGCCTAGTTCAAGTTCACTTCTTAAATCTTCCGACGCCATCTCCGACCAGTTTCCGGCGGGTCTCCGGGTACTTGTGGTGGATGATGACCCCACTTGCCTTATGATCCTTGATAGGATGCTACGTGCTTGCTTCTATGAAGTGACCAAATGCAAGAGAGCAGAGGTTGCATTGTCTATTCTTAGAGAGAACAAAAATGGGTTCGATATCGTTCTAAGCGACGTGCATATGCCCGATATGGATGGATTTAAACTTCTAGAGCATATTGGATTGGAGATGGACCTTCCGGTTATTATGATGTCAGCAGATGATGGAAAACAAGTTGTAATGAAGGGTGTGACTCATGGTGCTTGCGATTATCTGATTAAACCCGTGCGTATAGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGTAGAAGAAAGAACGGGTCTAAAGATCTGGAGCAATCGGGTAGTGTAGATGAAGGAGATCGACAACTAAGGGCATTTGATGATGCGGATTACTCGTCGTCTGCAAATGAAGGGAAATCCTCAAAGAAGAGGAGGGATGAGGAAGAAGATCCAGATGAGAGGGATGATTCTTCCACGTTAAAGAAGCCGCGAGTCGTTTGGTCTGTTGAACTCCATCAACAGTTCATGGCTGCTGTCAATCAGCTAGGACTGGACAAGGCCGTTCCTAAAAAGATTCTGGAATTGATGAATGTTGCTGGTCTAACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTTTGTACCTTAGAAGGCTGAGTGGAGTATCACCACAGCAAAATAACTTGAATAACCCCTTCATCAGCCCCCAAGAGGCATCATTCGGGACAACTTCAATCAATGGAATTGATCTTCTAACTCTTCAAGCTGCTGGCCATCTCCCAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGGCTTGGCAGGCCAACTGCAAAAGCAGGTGTATCTATGTCTCTAGTTGAACAAAGGAACCTTTTCAGTTTTGAAAACCCAAGAATAAGCTTTGGAGAAAGCCAACTGCAACATTTGAACAATAGTAAACCAATGAACTTACTTCATGGAATCCCTACCAACATGGAGCCAAAACAGCTTGCCAATTTGCACCAATCTACCCAATCCCTTGGCAACTTGAACATGCGAGTAAATTCTTCTACCGCACAGAGCAACCCCGTGTTGATGCATATGGCTCAATCCCAACCAAGAGGTCAGATGCTAAGTGAAAATACTGGTTCTCATGTTAATAGGCTTCCATCATCTTTGGTGCAGACTACATTACCAAATGGAATTTCTAATGGTGTTTTGGGAAATGGGATTGCGGGTATCAGCAATATAAATACTGCTTATAATCCACTTCAACAAAACTCTTCAATTTTGAGTTTTCCCATGAACCAATCCACTGAAATGGCTGTCACTAGTTTCCCTCTTGGAAGCACTCCACGAATATCCAGTATGGCAACAAAAGGCATGTTTCATGAAGAAGTTTCTTCGGGATTTAAGGGACCTAGTGGATTTGTTCCAAGTTATGATATCTTTAATGAACTCAATCATCACAAGTCCCATGATTGGGACTTAGCGAATGCAGGTCTAACATTTGATGCCTCTCAGCATGCAAATACTTTAACAGGTAACATTGATGTATCACCATCAGTTTTAGTCCATCAGAATTTTCCAACTATCCACCAGACTGGACAAAATAGAGATGCTACTTCAATTGGAAAAGGTATGTTCTCAATGAGTGAAGGAATAAATCAAGGTAATCTCCAAAACCTTGGTCAACACGTCAATATGCATCTTGTTGACAACTCAGTAAAGGTTAAAGCTGAAAGAGTTCATGATCCAAGCTCCCAGATTAACCTCTTCTCTGAGCAATATGGGCAAGAGGATCTTATGAGTGCGCTTCTGAAACAGCAAGGAGGCATTGGACTAGCTGATAATGAGTTTGACTTTGATGGATATTCCTTAGACAACATTCCGGTCTAG	2016	0.4266	MNLSMSTPSSSSLLKSSDAISDQFPAGLRVLVVDDDPTCLMILDRMLRACFYEVTKCKRAEVALSILRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRRRKNGSKDLEQSGSVDEGDRQLRAFDDADYSSSANEGKSSKKRRDEEEDPDERDDSSTLKKPRVVWSVELHQQFMAAVNQLGLDKAVPKKILELMNVAGLTRENVASHLQKYRLYLRRLSGVSPQQNNLNNPFISPQEASFGTTSINGIDLLTLQAAGHLPAQSLAKLQAAGLGRPTAKAGVSMSLVEQRNLFSFENPRISFGESQLQHLNNSKPMNLLHGIPTNMEPKQLANLHQSTQSLGNLNMRVNSSTAQSNPVLMHMAQSQPRGQMLSENTGSHVNRLPSSLVQTTLPNGISNGVLGNGIAGISNINTAYNPLQQNSSILSFPMNQSTEMAVTSFPLGSTPRISSMATKGMFHEEVSSGFKGPSGFVPSYDIFNELNHHKSHDWDLANAGLTFDASQHANTLTGNIDVSPSVLVHQNFPTIHQTGQNRDATSIGKGMFSMSEGINQGNLQNLGQHVNMHLVDNSVKVKAERVHDPSSQINLFSEQYGQEDLMSALLKQQGGIGLADNEFDFDGYSLDNIPV	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal5g1683	671	SUPERFAMILY	Homeodomain-like	203	263	IPR009057	-
	Lal5g1683	671	PIRSF	RR_ARR_type-B	7	663	IPR017053	GO:0003677\|GO:0003700\|GO:0009736
	Lal5g1683	671	Pfam	Response regulator receiver domain	30	138	IPR001789	GO:0000160
	Lal5g1683	671	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	4	641	-	-
	Lal5g1683	671	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	206	259	IPR006447	GO:0003677
	Lal5g1683	671	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	205	262	IPR017930	-
	Lal5g1683	671	SUPERFAMILY	CheY-like	27	149	IPR011006	-
	Lal5g1683	671	Pfam	Myb-like DNA-binding domain	208	258	IPR001005	-
	Lal5g1683	671	MobiDBLite	consensus disorder prediction	150	205	-	-
	Lal5g1683	671	Gene3D	-	203	265	-	-
	Lal5g1683	671	Gene3D	-	28	160	-	-
	Lal5g1683	671	MobiDBLite	consensus disorder prediction	150	171	-	-
	Lal5g1683	671	SMART	REC_2	28	140	IPR001789	GO:0000160
	Lal5g1683	671	CDD	REC_typeB_ARR-like	30	144	-	-
	Lal5g1683	671	MobiDBLite	consensus disorder prediction	181	205	-	-
	Lal5g1683	671	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	4	641	IPR045279	GO:0009736
	Lal5g1683	671	ProSiteProfiles	Response regulatory domain profile.	29	144	IPR001789	GO:0000160

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal5g1683	Lal-Chr5	19047792	19051815	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal5g1683	62	671	Response Regulator Gene Family	AT3G16857	49.390	2.28e-169	496

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-ARR-B	Lal5g1683		Response_reg	2.3e-22	CL0304