Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1657 ATGACTTCATCAACAATAAAGCGAACTAAACCAAATCCTTCACACTCTGTTACCAAAGCAATTGCTCAATACACCGAAGACGCTCGTCTTCACACTGTTTTTGAACAATCATCTTTCAACTCATCCCATATTCTCACCACCACCACCACCACCCCCACCGCCACCGATTCCCTCCCTGAACAACAGATCACCTCCTACCTCCTCAAGATTCAGCGCGGTGGCACCATCCAGCCCTTCGGCTGCATGATCGCCGTCGACGAACCTTCCTTCCGCATCATTGGCTATTCCGATAATGCCCGCGACATGCTCGGCATAACTCCCCAGTCAGTCCCCACTCTCGAGAGACCGGAGGTGTTGACCGTTGGGACTGATGTTCGAACCATTTTTTCTAATTCCAGTGCGGTTCTGTTAGAGAATGCTTTCCGGGCGCGTGAAATCACGCTCCTCAACCCGATTTGGGTCCACTCCAGAAGCTCCGGGAAGGCTTTTTATGGTATATTGCACCGGATTGATGTTGGTGTTGTTATTGATTTGGAGCCCGCGAGGACTGAAGACCCTGCACTGTCTATTGCTGGGGCAGTGCAGAGTCAGAAACTCGCCGTTCGCGCCATTTCGTTGTTGCAATCACTCCCCGGGGGTGATATTAAGCTTCTTGTTGACACTGTGGTTGAGAGTGTTAGGGAGTTAACTGGGTATGATAGAGTTATGGTGTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGGCTGATTTGGAGCCGTATATCGGTTTGCATTACCCTGCCACTGATATACCGCAGGCTTCGCGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATCGCGGATTGTCATGCTTCTCCTGTGAAGGTGGTTCAGGATGAGGCTCTTGTGCAGCCATTGTGTTTGGTTGGATCCACGCTTCGTGCACCTCATGGTTGTCATGCTCAGTATATGGCTAATATGGGTTCCATTGCTTCGTTGGCGATGGCGGTTATAATCAATGGGAATGACGAAGAAGGTGTTGGCAGCCGTAGCTCGATGAGGCTTTGGGGTTTGGTTGTTTGCCATCATACTTCTCCTAGGTATATACCTTTTCCTTTACGATATGCTTGTGAGTTCCTGATGCAGGCCTTTGGGTTGCAATTGAATATGGAACTTCAATTGGCATCACAGTCGTTGGAGAAACGGGTTTTGAGGACGCAGACTCTCTTGTGTGACATGCTTCTCAGGGACTCTCCTACTGGCATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTGAAGTGTGATGGAGCAGCTCTCTATTACCAAGGAAATTATCACCCATTAGGTGTTACCCCAACTGAGTCTCAGATAAGGGACATCATAGAGTGGTTGTTGGCCTTCCATGGAGATTCGACAGGTTTAAGCACTGATAGTTTGGCTGATGCTGGTTACCCTGGTGCCGTCTCACTTGGGGACACGGTTTGTGGGATGGCGGTTGCTTATATTACAGAAAAGGATTTCCTTTTCTGGTTCAGATCTCACACAGCCAAAGAGATCAAATGGGGTGGTGCAAAGCATCACCCGGAGGATAAGGATGACGGCCAGAGAATGGATCCTCGATCTTCATTTAAGGCATTTTTGGAAGTGGTAAAAAGCCGTAGTTTGCCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTTTGCGAGACTCCTTTAGAGATTCTGAGCGTACCAATTCCAAGGCTGTTGTAAATACTAATTTGGCAGAAAGAGAGTTGCAAGGGGTAGATGAACTGAGTTCTGTGGCTAGAGAAATGGTTAGGTTGATAGAAACTGCTACTGCTCCCATATTTGCTGTTGACATTGATGGCCGCATAAATGGGTGGAATGCAAAGGTTTCAGAATTGACAGGACTCGCAGTTACTGAGGCTATGGGCAAGTCCCTTGTTCATGATCTTGTGTTTAAGGAGTATGAAGAAACTGTTGATAGGCTTCTTTCTCATGCTTTAAGAGGTGACGAAGATAAAAATGTTGAGATAAAAATGAGGACGTTTGGCCCGGAACATCAAGATAAGGCAGTTTTTGTTGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAAGATGTTACAGGTCAAAAAATTGTAATGGACAAGTTTGTTAACATACAAGGTGACTACAAAGCTATTATACATAGCCCAAATCCGTTGATCCCTCCCATTTTTGCATCGGATGATAACATATGTTGCTTAGAGTGGAACACTGCCATGGAAAACCTTACTGGTTGTGGCCGTGCTGATGTCATTGGAAAAATGCTGGTGGGAGAGGTTTTTGGTAGTTGCTGTCAATTGAAGGGTCCAGATGCTATGACAAAGTTCATGATTGTCTTGCACAATGCTCTTGGTGGACAAGATACTGATAAATTCCCTTTTTCATTTCTTGACCGGCATGGAAAATATGTGCATGCTTTCTTGACTGCAAATAAGAGGGTTAACATGGATGGTCAGATCATTGGGGCTTTTTGCTTTCTCCAAATTGTGAATCCTGAACTTCAACAGGCTCTGAAAGTCCAGAAACAACAGGAGAAGAATTGCTTTGCTAGGATGAAAGAATTAGCTTATATTTGTCAAGAAGTAAAGAATCCTTTGAACGGCATTCGATTTACAAACTCTCTTTTGGAAGCTACAGTCTTAACTGATGAGCAAAGGCAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTAAATATTATACGGGATGTTGATCTGGACATTATCGAGGACGGGTCCTTGGAGCTTGAAAAAACGGAGTTCTTGCTTGGGAATGTCATAAATGCAGTTGTAAGCCAAGTAATGTTATTGCTAAGAGAAAGAAAGTTACAGCTGATTCGTGATATTCCTGAACAAATCAAAACATTGGCTCTTTATGGTGATCAATTGAGGATTCAACAAGTCTTAGCTGATTTCTTATTGAATATGGTGCGCTACGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTATGTCCAAGAATAAAACAAATTTCTGATGAACTGACTCTTCTTCATGCTGAATTTAGGATGGTATGTCCCGGTGAAGGTCTTCCTCCTGAGTTGATTCAAGACATGTTCCACAACAGTAGGTGGGTGACTCAAGAAGGGTTAGGGCTGAGCATGAGCAGGAAGATTCTAAAGTTAATGAACGGCGAAGTCCAATATATCAGGGAGGCAGAACGGTGCTACTTCTTGATTCTTCTTGAACTACCCATAACACAACACGGAGAAGCTCTACAA 3345 0.4451 MTSSTIKRTKPNPSHSVTKAIAQYTEDARLHTVFEQSSFNSSHILTTTTTTPTATDSLPEQQITSYLLKIQRGGTIQPFGCMIAVDEPSFRIIGYSDNARDMLGITPQSVPTLERPEVLTVGTDVRTIFSNSSAVLLENAFRAREITLLNPIWVHSRSSGKAFYGILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISLLQSLPGGDIKLLVDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPATDIPQASRFLFKQNRVRMIADCHASPVKVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEEGVGSRSSMRLWGLVVCHHTSPRYIPFPLRYACEFLMQAFGLQLNMELQLASQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYHPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAVSLGDTVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMDPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDSERTNSKAVVNTNLAERELQGVDELSSVAREMVRLIETATAPIFAVDIDGRINGWNAKVSELTGLAVTEAMGKSLVHDLVFKEYEETVDRLLSHALRGDEDKNVEIKMRTFGPEHQDKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKIVMDKFVNIQGDYKAIIHSPNPLIPPIFASDDNICCLEWNTAMENLTGCGRADVIGKMLVGEVFGSCCQLKGPDAMTKFMIVLHNALGGQDTDKFPFSFLDRHGKYVHAFLTANKRVNMDGQIIGAFCFLQIVNPELQQALKVQKQQEKNCFARMKELAYICQEVKNPLNGIRFTNSLLEATVLTDEQRQFLETSAACEKQMLNIIRDVDLDIIEDGSLELEKTEFLLGNVINAVVSQVMLLLRERKLQLIRDIPEQIKTLALYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVCPRIKQISDELTLLHAEFRMVCPGEGLPPELIQDMFHNSRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFLILLELPITQHGEALQ 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1657 1115 Pfam Phytochrome region 405 579 IPR013515 GO:0006355|GO:0009584
Lal5g1657 1115 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 1110 - -
Lal5g1657 1115 PANTHER PHYTOCHROME 12 1110 - -
Lal5g1657 1115 SUPERFAMILY GAF domain-like 194 389 - -
Lal5g1657 1115 CDD PAS 752 860 IPR000014 -
Lal5g1657 1115 Gene3D - 397 570 IPR043150 -
Lal5g1657 1115 SMART HisKA_10 882 946 IPR003661 GO:0000155|GO:0007165
Lal5g1657 1115 ProSiteProfiles PAS repeat profile. 607 678 IPR000014 -
Lal5g1657 1115 Pfam GAF domain 214 392 IPR003018 GO:0005515
Lal5g1657 1115 Gene3D - 195 553 IPR029016 -
Lal5g1657 1115 SUPERFAMILY PYP-like sensor domain (PAS domain) 70 184 IPR035965 -
Lal5g1657 1115 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 214 382 IPR016132 -
Lal5g1657 1115 Gene3D PAS domain 605 729 - -
Lal5g1657 1115 PRINTS Phytochrome signature 129 151 IPR001294 GO:0006355|GO:0009584
Lal5g1657 1115 PRINTS Phytochrome signature 229 248 IPR001294 GO:0006355|GO:0009584
Lal5g1657 1115 PRINTS Phytochrome signature 314 335 IPR001294 GO:0006355|GO:0009584
Lal5g1657 1115 PRINTS Phytochrome signature 422 442 IPR001294 GO:0006355|GO:0009584
Lal5g1657 1115 PRINTS Phytochrome signature 507 526 IPR001294 GO:0006355|GO:0009584
Lal5g1657 1115 PRINTS Phytochrome signature 540 558 IPR001294 GO:0006355|GO:0009584
Lal5g1657 1115 PRINTS Phytochrome signature 610 626 IPR001294 GO:0006355|GO:0009584
Lal5g1657 1115 PRINTS Phytochrome signature 629 644 IPR001294 GO:0006355|GO:0009584
Lal5g1657 1115 PRINTS Phytochrome signature 703 720 IPR001294 GO:0006355|GO:0009584
Lal5g1657 1115 PRINTS Phytochrome signature 723 743 IPR001294 GO:0006355|GO:0009584
Lal5g1657 1115 Gene3D - 863 944 - -
Lal5g1657 1115 ProSitePatterns Phytochrome chromophore attachment site signature. 314 323 IPR013516 -
Lal5g1657 1115 Gene3D - 945 1111 IPR036890 -
Lal5g1657 1115 Pfam PAS fold 66 181 IPR013654 GO:0006355
Lal5g1657 1115 CDD PAS 618 725 IPR000014 -
Lal5g1657 1115 PIRSF Phytochrome_conventional 1 1114 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lal5g1657 1115 Pfam PAS fold 610 725 IPR013767 GO:0006355
Lal5g1657 1115 Pfam PAS fold 741 860 IPR013767 GO:0006355
Lal5g1657 1115 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 994 1101 IPR003594 -
Lal5g1657 1115 SMART HKATPase_4 994 1107 IPR003594 -
Lal5g1657 1115 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 874 938 IPR036097 GO:0000155|GO:0007165
Lal5g1657 1115 SMART gaf_1 214 402 IPR003018 GO:0005515
Lal5g1657 1115 SUPERFAMILY PYP-like sensor domain (PAS domain) 755 859 IPR035965 -
Lal5g1657 1115 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 957 1103 IPR036890 -
Lal5g1657 1115 SUPERFAMILY GAF domain-like 400 577 - -
Lal5g1657 1115 SMART pas_2 740 810 IPR000014 -
Lal5g1657 1115 SMART pas_2 609 676 IPR000014 -
Lal5g1657 1115 CDD HATPase_Phy-like 993 1105 IPR044767 -
Lal5g1657 1115 ProSiteProfiles Histidine kinase domain profile. 889 1109 IPR005467 -
Lal5g1657 1115 ProSiteProfiles PAS repeat profile. 741 793 IPR000014 -
Lal5g1657 1115 CDD HisKA 882 942 IPR003661 GO:0000155|GO:0007165
Lal5g1657 1115 Pfam His Kinase A (phospho-acceptor) domain 886 942 IPR003661 GO:0000155|GO:0007165
Lal5g1657 1115 Gene3D PAS domain 754 862 - -
Lal5g1657 1115 SUPERFAMILY PYP-like sensor domain (PAS domain) 614 722 IPR035965 -
Lal5g1657 1115 Gene3D PAS domain 69 317 - -
Lal5g1657 1115 TIGRFAM sensory_box: PAS domain S-box protein 614 729 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1657 Lal-Chr5 18846174 18850934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1657 14 1107 Histidine Kinase Gene Family AT4G16250 73.917 0.0 1710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1657 K12121 - gmx:100799831 1926.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1657 5 18846174 18850934 Lal11g0273 11 1937484 1942455 LSH