Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1653 ATGCCCCATGCATCCATGAATCTTCTCTCTCGCTGTTGGCACCCTTTCGGGAATTCCATTGATCAATCTTCTTCTTCTTCTTCTTCCTCTTCTTCAGGTTCTGCCATTCTCTCTAAAGATGGTTTGCTTTGGTTTCGCGATATCGGAAAACATGCCTCCGGCGATTTCTCTATGGCTGTCGTTCAGGCTAATCAGGTTCTCGAAGACCAGAGCCAGATCGAGTCTGGTCCTTTCGGTACCTTCGTTGGCGTCTACGATGGTCACGGTGGCCCCGATGCTGCGCGATACGTTTGCGATCATTTGTTCCGCAATTTTCAAGCAATAGCAGCTGAGTCACGGGGAGTTGTGACAGCTGAGACTATTCAAACGGCGTTCCTCCGAACCGAAGAGGGGTTCACTGCTCTTGTTTCAGAGCTGTGGAGTACACGGCCTCAAGTTGCGACTACTGGAACTTGTTGTTTGGTTGGGGTGATTTTTCAGCAGACACTCTTTGTGGCAAGTCTCGGAGATTCTCGTCTCGTGCTGGGTACGAAAGTTGGCAACACTGGTGGGGTTGCTGCAATTCAGCTGTCTACAGAGCACAATGCAAATCTTGAGGCCATTAGACAGGAACTCAAAGATTTACACCCCGACGACCCCCAGATTGTTGTTCTCAAACATGGAGTCTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCAATTAATGCAAAATTCAGACTTCCTGAACCAATGGACATGCCTTTCTTGTCTGCTAATCCAACTATTATTTCTCATCATCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCATCTGAGTAATGAAACAGCAGTAGATATTGTTCACAGCAATCCACGTGCGGGTAGTGCCAATAGACTTGTGAAGGCTGCCCTACACGAAGCTGCTAGAAAACGTGAAATGCGATATTCAGACCTACATAAGATTGACAAGAAGGTTCGGCGTCATTTTCATGATGATATTACTGTTATTGTTTTATTCTTAAACCACAACCTTATATCAAGAGGCTCAGTCTTAGACCCACCACTCTCGATTCGAAGTGCTCTCGATCACTGA 1140 0.457 MPHASMNLLSRCWHPFGNSIDQSSSSSSSSSSGSAILSKDGLLWFRDIGKHASGDFSMAVVQANQVLEDQSQIESGPFGTFVGVYDGHGGPDAARYVCDHLFRNFQAIAAESRGVVTAETIQTAFLRTEEGFTALVSELWSTRPQVATTGTCCLVGVIFQQTLFVASLGDSRLVLGTKVGNTGGVAAIQLSTEHNANLEAIRQELKDLHPDDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINAKFRLPEPMDMPFLSANPTIISHHLQPNDSFLIFASDGLWEHLSNETAVDIVHSNPRAGSANRLVKAALHEAARKREMRYSDLHKIDKKVRRHFHDDITVIVLFLNHNLISRGSVLDPPLSIRSALDH 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1653 379 CDD PP2Cc 56 356 IPR001932 -
Lal5g1653 379 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 5 379 - -
Lal5g1653 379 SMART PP2C_4 49 354 IPR001932 -
Lal5g1653 379 ProSiteProfiles PPM-type phosphatase domain profile. 55 356 IPR001932 -
Lal5g1653 379 PANTHER ALPHABET, ISOFORM E-RELATED 5 379 - -
Lal5g1653 379 Pfam Protein phosphatase 2C 80 325 IPR001932 -
Lal5g1653 379 SUPERFAMILY PP2C-like 64 357 IPR036457 -
Lal5g1653 379 Gene3D - 45 364 IPR036457 -
Lal5g1653 379 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1653 Lal-Chr5 18827837 18833377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1653 1 309 PP2C-type Phosphatase Gene Family AT3G17090 69.872 6.45e-159 447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1653 5 18827837 18833377 Lal11g0278 11 1967881 1971086 LSH
Lal7g0978 7 16063402 16067710 Lal5g1653 5 18827837 18833377 PCT
Lal19g1132 19 14872676 14876840 Lal5g1653 5 18827837 18833377 PCT
Lal5g1653 5 18827837 18833377 Lal7g0978 7 16063402 16067710 PCT
Lal5g1653 5 18827837 18833377 Lal19g1132 19 14872676 14876840 PCT