Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1652 ATGGCCTCATCTCTCATATCAACAAACCCAACCACAACAACAGATCGCTCACGTGACTCTCACGTGAAGAAAATGAAACATCAAAAACATCATAATCACCAGCAACCACGACAACCTAGCCATGCAAAATGGAAATCACACAAACAACAACGACTTTACTCTTCTAAGCTCCGTCAAGCTCTCACCAGACTCAACCTCGCCGGAAACCACCGTGGGAAAGAGGTCCGTGAAGCCGCGGACAGAGTCCTCGCCGTCACGGCCAATGGGAAGAGCCGATGGAGCCGTGCCATCCTCAAAAACCGGCTCAAGCTCAAGTTCAGAAAGCAGCATAAGAGAAAGAGAGTGGTTTCTTCCTCGACCGGGTCTAAGAAACAGACCCGGTTCAGTGTGCTCCGATTAAAAGGGAAAAGGGTTCCGGGTTTTCAGAGTAAAGTGAAGGTTCTAGGGCGGTTGGTTCCGGGTTGTAGAAAAGAAGCGTTGCCGGTTATTTTAGAAGAAGCTATTGATTATATACCTGCTCTTGAGATGCAGGTTCGAGCCATGACGGCTCTCTCTCAATTACTCTTTGCTTCTTCTGGTGGTGCCGCCTCTAGCTCCACCACTTTTCGCCCTTTATGA 618 0.4887 MASSLISTNPTTTTDRSRDSHVKKMKHQKHHNHQQPRQPSHAKWKSHKQQRLYSSKLRQALTRLNLAGNHRGKEVREAADRVLAVTANGKSRWSRAILKNRLKLKFRKQHKRKRVVSSSTGSKKQTRFSVLRLKGKRVPGFQSKVKVLGRLVPGCRKEALPVILEEAIDYIPALEMQVRAMTALSQLLFASSGGAASSSTTFRPL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1652 205 CDD bHLH_AtIBH1_like 130 184 IPR044549 GO:0006355
Lal5g1652 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Lal5g1652 205 MobiDBLite consensus disorder prediction 1 15 - -
Lal5g1652 205 MobiDBLite consensus disorder prediction 22 49 - -
Lal5g1652 205 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 9 200 - -
Lal5g1652 205 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 9 200 IPR044660 GO:0006355
Lal5g1652 205 MobiDBLite consensus disorder prediction 1 49 - -
Lal5g1652 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 190 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1652 Lal-Chr5 18824855 18825472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1652 41 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 55.429 2.71e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1652 - - gmx:100792237 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1652 5 18824855 18825472 Lal3g0141 3 907837 908400 LSH
Lal5g1652 5 18824855 18825472 Lal11g0279 11 1972514 1973146 LSH
Lal14g1584 14 16382210 16382824 Lal5g1652 5 18824855 18825472 PCT
Lal7g0980 7 16076439 16077038 Lal5g1652 5 18824855 18825472 PCT
Lal5g1652 5 18824855 18825472 Lal14g1584 14 16382210 16382824 PCT
Lal5g1652 5 18824855 18825472 Lal7g0980 7 16076439 16077038 PCT