Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1643 ATGAATATCCAAAGTGAGTTACTCATGGATGTAAAGGGAAAAGTAGTAAACAATTCAAGCACCATGATCCAAAGTGAAGAAGAAGAGGACATGGACCTAAGAAGAGGTCCTTGGACCGTGGATGAGGACCTTGCCCTTATCAATTACATTGCTAATCATGGTGAAGGTCGATGGAATTCTCTTGCTCGTTCAGCTGGATTGAAACGAACTGGTAAGAGCTGTAGATTGAGATGGTTGAATTATTTACGTCCAGATGTGAGACGTGGTAACATCACACTTGAAGAACAACTTCTTATTCTTGAACTCCATGCTCGCTGGGGAAACAGATGGTCAAAAATTGCTCAATATTTGCCAGGAAGAACCGACAATGAGATAAAAAATTATTGGAGAACTCGTGTCCAAAAGCATGCCAAACAACTTAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCTATGCGCTATCTTTGGATGCCAAGGCTGATGGAGCGCATCCAAGCTGCCGCCACCACAACCGGTTCATCAACCCTATCTGTCACTCCAAATGTCATCACTACCACCAATACCACAAACAACAACAACAATTTTGAGGTTCATAGTGGTGGGAACATGATGTTCTCTACTCCTACAATTATGAACAACAACTTTGGTTGTTCACAAATCAAACAAAGTTATACTCCAGAAAACAGCAGCACAGGCACTTCATCAGATTCTTTTGGGACCCATGTCTCACCAGTCTCGGATTTAACTCATGATTATTATAGTGTCCCGGTTTGCAGTAACAATAGTAACCCTAATATGGATTACTATCAACAATCTCATCAAGTCAACTACTTAGATTGCATCACAAGTCCATCAGGGTTGTTCTCAGCAGATATGGATTTCCAAATCATGGAACCAAATACCCAGTGGATTCAGAATGGGGACATATCCAACAATTTATGGAGTTTTGAGAACATGTTACAACAACTCAATGACAACATGTGA 987 0.4073 MNIQSELLMDVKGKVVNNSSTMIQSEEEEDMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHARWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLMERIQAAATTTGSSTLSVTPNVITTTNTTNNNNNFEVHSGGNMMFSTPTIMNNNFGCSQIKQSYTPENSSTGTSSDSFGTHVSPVSDLTHDYYSVPVCSNNSNPNMDYYQQSHQVNYLDCITSPSGLFSADMDFQIMEPNTQWIQNGDISNNLWSFENMLQQLNDNM 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1643 328 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Lal5g1643 328 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Lal5g1643 328 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Lal5g1643 328 SMART sant 34 84 IPR001005 -
Lal5g1643 328 SMART sant 87 135 IPR001005 -
Lal5g1643 328 PANTHER MYB TRANSCRIPTION FACTOR 9 321 - -
Lal5g1643 328 Gene3D - 92 155 - -
Lal5g1643 328 CDD SANT 103 131 IPR001005 -
Lal5g1643 328 Gene3D - 32 88 - -
Lal5g1643 328 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Lal5g1643 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Lal5g1643 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 86 IPR017930 -
Lal5g1643 328 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Lal5g1643 328 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 9 321 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal5g1643 328 CDD SANT 37 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1643 Lal-Chr5 18758454 18760741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1643 9 315 MYB Transcription Factor Family AT3G06490 51.988 1.31e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal5g1643 Myb_DNA-binding 4.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1643 K09422 - gmx:100805341 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1643 5 18758454 18760741 Lal3g0151 3 957980 960367 LSH