Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1632 ATGGCATCAGCAGAAGCAGCTTCTGCTGGTAGTGGTCCCCGATATGCCCCTGATGATCCAACTCTTCCACAGCCATGGAAGGGTTTGATTGATGGCAGCACTGGTGTGTTATACTATTGGAATCCTGAAACCAATGATACCCAATATGAAAGACCTGCTCCCTTGGCCCCACCTGTGTCTTCAGGCCCTGCACCTGGGGCCTCTACGCCGAACTTGGCTCCCATACCGAGTGCTCACACGGTACAGCCTGAACAGCAGCAGGGAAGTCACCTTGGCCAACAGTATGGGCAACCGATGCAGCAACAACAGCAGCAGCAGCCATCTCAGGTTGCTCATTCTGAACAGCAGATGAATTCACAGCTGGCACAGTCTGCGATGCAGTCTGGATATCAAGCGAGGCCACAAATGATGCATCCTCAAGGACAACATATGATGCAGCCTCAAGGACAACAAATGATGTATCCTCAAGGACAACAAATGCATCATCAGATACCGCCACAGCAGACACATTCCCAGCATTATGGGCAAGGCATGTCTCAGGATCATGGCTTGCATAATGTGCAACCACAAGCACATCAATTCACTCCTCAGAACATGCACTATATGTCATATCAGCAAAACATGATTCAATCTGGGCAACCAAATTCCCAGTCGCTGCAGCCGAACATGAACGCCTCTGGGCAGCCTAACTCTCAGCACAGTCAGCATAACACGCATGGTCAACCCTCGTTTGAAAGTCAACAAGATTATAAAACAGCATATCCGAAGACAGATGATTCAGAGTTTAAGAATGGAAGCCAAGTTGGACATTCACCATCCCAGTATCAACAAAGAAGTGCCTTGCCCGTTCATAACAATAAGAACGTTTCTGCTGAAATCAGTTCAGGTCAAGTGCCAAATGTTGGTGCTAATGCTGCACAACCGCAACAGTTCAGGGGCTTATCAGGAAATGTGCATCAGTCTCCCTCAGGAATGCTGTCGCCACAGGGTGGTTCTGATTTATTCTACCAACATGGTCCTGGTCCTAACTTTCAAAACCAGATGAGCTCTGGAATGATGCATGGTCATCCATCCCATGTCCATCCTGCTGGCCAAAAGATGGGCCATGATGACAATTTACATGGTCGGCCTGGGAATGAATATCACTACAATTCTAGCAAAGAGGTGCCGACAATGAGCCGTCATCAGCCGGATATAGCACAAATACCCATTTCAGGAAACCGGCAGGATATGAGGATTGGAAACCCTGCTTTTCAAAATGTAATGCCTGGTGGAAGTGGAATTGCTGGGAATGCTATGCATAACACGTTCACTCCTCCAATTGGGGGACCACCACCTGTCTCAAGTAACGCTCCAATTAGGCCTCCTTTTACTGGATCTTCAGATGTCTCCGGTCTCTCACAAGCTGAACTTTACTGCCAGCAACATGAAGTTACAGCAACAGGAGACAACATTCCACCCCCTTTTATGTCATTTGATGCTGCTGGGTTTCCTCCAGAGTTATTGAGGGAGGTAAGTTTATTCTTTCGTGTTATGACGTGCGATATCTGCTCCAGAGCAGGAGCATATGTCATATATTCTGCTGGCTTCTCCAATCCTACCCCAATTCAGGCTCAAACATGGCCTGTTGCACTACAGGGTAGAGACATAGTGGCAATTGCTAAAACAGGCTCTGGAAAAACATTGGGCTATGTAATTCCTGCCTTCCTTCTTCTTAGACAGCGGCATAATAATGCCCTAAATGGCCCTACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCAACGCAGATCCAAGACGAGGTCGTTAAATTTGGCCGTTCTTCACGTATCTCTTGCACGTGCTTGTATGGTGGGGCACCTAAAGCTCTTCAGCTAAAAGAATTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGCCTCAATGATATACTTGAAATGAAGAAAATTAACTTCGGGCAAGTTTCACTCCTTGTGCTCGACGAGGCTGATCGGATGCTTGATATGGGTTTCGAACCTCAAATTCGTAAGATTGTGAATGAGATTCCCCCACGCAGACAAACTCTCATGTATACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCCAGTGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAATGTAGATGAGCTTGCTGCAAATAAATCTATCACACAGTATGTTGAAGTTGTATCACAAATGGAGAAACAGAGGCGTTTGGAGGAGATCCTCAGTCAACAAGAACGAGGTTCTAAGGTCATAATATTTTGTTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTAGTATTGGCCGTAGTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTATGTTTTAAATCAGTTCCGGTCTGGCAAGTCACCGATTCTGGTTGCAACAGATGTTGCTGCTCGTGGGCTTGACATCAAGGATATAAGGGTGGTGATCAACTATGATTTTCCAACTGGAGTTGAGGACTATGTACACCGCATCGGGAGAACTGGAAGGGCAGGTGCTACTGGAGTGGCATATACATTTTTCTCTGAGCAGGACTGGAAGCATGCAGGTGATTTAATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCACAGCTGAGAGATATAGCTTCGCGTGGGCCTCCCAATTTTGGAAAGGATCGGGGTGGAGTGAATCGGTTTGATTCTGGTGGTCGTGTTGGTGGGCGCTGGGAGGCTGGTGGTCGTGGTGGGATGAGAGATGGTGGCTTTGGTGGACGTGGTGGGATGAGAGATGGTGGCTTTGGTGGACGTGGTGGGATGAGAGATGGTGGGTTTGGTGGTCGTGGTGGCATGAGGGATGGTGGGTTTGGTGGTCCTCCTGGTGGAATGAGGGATGGTGGCTTTGGTGGTTCTCCTGGTGGCATGAGGGATGGTGGATTTGGTGGTCGTGGTGGCATGCGGGATGGATCTGGTGGCCGAGGTGGGAGAGGTGATTTCTTTCCAGGTAGGGGTAACAGAGGTCGGGGATTTGATGGCCCTCGTGGGGGTCATGGTGGTTGGGGTAGGGATGAAGAGGGCCTGAATGATCGGTACAGCATGGATGGGCGTGGACGAGGGCGTGGACGTGGGCGATTTGACAATAGAAGGGATGTCGGTTTCAGAAACAGAGGCCGAAGTACTAGTCGTAGTCCTGAAAGAGTTCGGACATGGGATGCTAGCAGCAGAAGCCGCAGCAGAAGCAGAAGTAGGAGCTGGAGCAGGGGTCGAAGCCGAAGCCGCAGTTGGTCTCGCGATCGTAGTCGCAGCTACAGCCGTAGCATTAGCCCACATAGGAGCCGCAGCCGTAGCCGTGGTCGTAGAAGTTACAGCCGCAGCCGCAGCCCTGCCCCTTATGTTAGGCGCAATAGGCCAAGTAAGTTTTCTGATATGGCACCAGAAGTAGGAGCTGGTACTGATCCAAGAATGTTGGGAGCTGAACATGTGGAGCAAGTACCTGTTGTTGGGAGTACTGGCCTAGATAATCCAGAGGCGGTAGACCTTTCTCATCAACCAGGTTCTGGTGTTTGA 3582 0.4916 MASAEAASAGSGPRYAPDDPTLPQPWKGLIDGSTGVLYYWNPETNDTQYERPAPLAPPVSSGPAPGASTPNLAPIPSAHTVQPEQQQGSHLGQQYGQPMQQQQQQQPSQVAHSEQQMNSQLAQSAMQSGYQARPQMMHPQGQHMMQPQGQQMMYPQGQQMHHQIPPQQTHSQHYGQGMSQDHGLHNVQPQAHQFTPQNMHYMSYQQNMIQSGQPNSQSLQPNMNASGQPNSQHSQHNTHGQPSFESQQDYKTAYPKTDDSEFKNGSQVGHSPSQYQQRSALPVHNNKNVSAEISSGQVPNVGANAAQPQQFRGLSGNVHQSPSGMLSPQGGSDLFYQHGPGPNFQNQMSSGMMHGHPSHVHPAGQKMGHDDNLHGRPGNEYHYNSSKEVPTMSRHQPDIAQIPISGNRQDMRIGNPAFQNVMPGGSGIAGNAMHNTFTPPIGGPPPVSSNAPIRPPFTGSSDVSGLSQAELYCQQHEVTATGDNIPPPFMSFDAAGFPPELLREVSLFFRVMTCDICSRAGAYVIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYVIPAFLLLRQRHNNALNGPTVLVLAPTRELATQIQDEVVKFGRSSRISCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKINFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELAANKSITQYVEVVSQMEKQRRLEEILSQQERGSKVIIFCSTKRLCDQLARSIGRSFGAAAIHGDKSQGERDYVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAGDLIKVLEGANQHVLPQLRDIASRGPPNFGKDRGGVNRFDSGGRVGGRWEAGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGGFGGRGGMRDGGFGGPPGGMRDGGFGGSPGGMRDGGFGGRGGMRDGSGGRGGRGDFFPGRGNRGRGFDGPRGGHGGWGRDEEGLNDRYSMDGRGRGRGRGRFDNRRDVGFRNRGRSTSRSPERVRTWDASSRSRSRSRSRSWSRGRSRSRSWSRDRSRSYSRSISPHRSRSRSRGRRSYSRSRSPAPYVRRNRPSKFSDMAPEVGAGTDPRMLGAEHVEQVPVVGSTGLDNPEAVDLSHQPGSGV 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1632 1193 Pfam DEAD/DEAH box helicase 534 704 IPR011545 GO:0003676|GO:0005524
Lal5g1632 1193 SMART ww_5 21 54 IPR001202 GO:0005515
Lal5g1632 1193 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Lal5g1632 1193 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 661 669 IPR000629 -
Lal5g1632 1193 MobiDBLite consensus disorder prediction 73 184 - -
Lal5g1632 1193 SUPERFAMILY WW domain 17 53 IPR036020 GO:0005515
Lal5g1632 1193 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Lal5g1632 1193 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 283 975 - -
Lal5g1632 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 864 IPR027417 -
Lal5g1632 1193 MobiDBLite consensus disorder prediction 1 184 - -
Lal5g1632 1193 CDD WW 23 54 IPR001202 GO:0005515
Lal5g1632 1193 SMART helicmild6 765 849 IPR001650 -
Lal5g1632 1193 CDD SF2_C_DEAD 729 858 - -
Lal5g1632 1193 Gene3D - 720 890 IPR027417 -
Lal5g1632 1193 Gene3D - 465 719 IPR027417 -
Lal5g1632 1193 Pfam Helicase conserved C-terminal domain 741 849 IPR001650 -
Lal5g1632 1193 MobiDBLite consensus disorder prediction 211 280 - -
Lal5g1632 1193 Pfam WW domain 22 52 IPR001202 GO:0005515
Lal5g1632 1193 MobiDBLite consensus disorder prediction 1022 1083 - -
Lal5g1632 1193 MobiDBLite consensus disorder prediction 887 1193 - -
Lal5g1632 1193 SMART ultradead3 529 732 IPR014001 -
Lal5g1632 1193 MobiDBLite consensus disorder prediction 259 280 - -
Lal5g1632 1193 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 541 715 IPR014001 -
Lal5g1632 1193 MobiDBLite consensus disorder prediction 1096 1110 - -
Lal5g1632 1193 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 744 888 IPR001650 -
Lal5g1632 1193 MobiDBLite consensus disorder prediction 211 251 - -
Lal5g1632 1193 MobiDBLite consensus disorder prediction 1111 1127 - -
Lal5g1632 1193 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 283 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1632 Lal-Chr5 18692287 18700008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1632 478 869 Eukaryotic Initiation Factors Gene Family AT3G19760 34.097 3.41e-63 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1632 K12823 - gmx:100807830 1327