Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1626 ATGTGCAGCATCTTTGTTCCAATCATGGATAATTACCAAGGTGATTTAACTGACATAGTTCGTGCTAGTACTGGTGGAGCATATAGCACTAGCAGTACCACAACTTCTTCTTCACAAGCTGCAACAAATAATCACTTTTCTCATCATCAGTGGCACCATCACTTTTCTTCTGATCCTATCAATTTCTCTTCTGCTGTTTTGGAAGAAGGAACCAACTTTGGTGATCCATTCTCAACCTTATTGAGAGATCCATTCTCAAACATGAGAGATCCCTTCTTACATGAGCTTGATATTATGCCTAATCAAGGGAATAATTCTTCACCCTACTTCAACACCTCAACAACAAAAACAATAACAACAACTTCAACTTCTGCTGAAATTATAAGCACTTCTTGTGGGGCTTTGGAAGATGCAGCACCTTGTTTTGGTGTTAATACTAATACTACTAGTTCTACTTCTGTTTTTGGACACAAGATTCATGAAGATGACAGCATCATGAGATCATCAAGGCCTTCTTCTAAGAACATATTCTCAAACATGATTCAGATCTCTCCTAATGCTGCAAAATTACCTCTCTCACCGTACGATTCTACTTCTCAGGTCATGGTAGCTTCTCCAAGGGAAATTAAGCCTTCTGCTATGGTTTCAGGTAACATGATTAATGTAACAAACACTTCCAAGGGTTGCCTTGTTGACAACACAGGAGGAGTTCAGATCTCATCTCCACGGAATCCGGGTCTTAAAAGAAGGAAGAACCAGGCAAAAAAGGTAGTGTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAAGTAGTTCCTTCAGATTTGTGGGCTTGGAGAAAATACGGTCAGAAACCCATCAAAGGTTCACCTTATCCAAGGGGTTATTATAGATGCAGCAGTTCAAAGGGTTGTTCTGCAAGGAAACAAGTTGAGAGGAGCAGAACAGACCCAAACATGTTGGTTATTACTTACACTTCAGAGCACAATCATCCTTGGCCAACTCAAAGAAATGCCCTAGCTGGTTCATCAAGATCCCAACCATCCAAGAACACTAACCATACTTCAACTTCAAAGAATTCAGAAATCTCTCACAAGGGCATAACAATAACAACAACAAAGCCAGAGGAAGAGAAACAAGAGAGCAACAATAGTGAAGGCAATGTGTCTGTGAAGGAAGAGATAGAAATGGAAGACATAGAGAAGCAGATTGATATGGATGATGGAGAATTCAGTGATGGACTTTCTTACAAGCCATCTATGTTGGAAAATAGTAATAGCCATAATAATCAATGTCATGAGGACTTCTTTGCAGAATTGGAGGAAATAGAAGCTGACCCACTAAACCTATTGTTTACTCAAGGTTTCAATGATCAGAGGGAATCCAAGGCCTTAGATCCATACCATCTCTTTGATTGGTCAGGAGGAGGCACCACCAACTCATTTGAAGAACCTAATAATAGTAGGAGAAGGTTATAA 1488 0.4012 MCSIFVPIMDNYQGDLTDIVRASTGGAYSTSSTTTSSSQAATNNHFSHHQWHHHFSSDPINFSSAVLEEGTNFGDPFSTLLRDPFSNMRDPFLHELDIMPNQGNNSSPYFNTSTTKTITTTSTSAEIISTSCGALEDAAPCFGVNTNTTSSTSVFGHKIHEDDSIMRSSRPSSKNIFSNMIQISPNAAKLPLSPYDSTSQVMVASPREIKPSAMVSGNMINVTNTSKGCLVDNTGGVQISSPRNPGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQPSKNTNHTSTSKNSEISHKGITITTTKPEEEKQESNNSEGNVSVKEEIEMEDIEKQIDMDDGEFSDGLSYKPSMLENSNSHNNQCHEDFFAELEEIEADPLNLLFTQGFNDQRESKALDPYHLFDWSGGGTTNSFEEPNNSRRRL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1626 495 Pfam WRKY DNA -binding domain 278 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g1626 495 MobiDBLite consensus disorder prediction 302 321 - -
Lal5g1626 495 MobiDBLite consensus disorder prediction 329 373 - -
Lal5g1626 495 SUPERFAMILY WRKY DNA-binding domain 274 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal5g1626 495 SMART WRKY_cls 276 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g1626 495 MobiDBLite consensus disorder prediction 329 397 - -
Lal5g1626 495 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 13 478 - -
Lal5g1626 495 Gene3D WRKY domain 250 330 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal5g1626 495 ProSiteProfiles WRKY domain profile. 271 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g1626 495 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 478 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1626 Lal-Chr5 18648976 18653429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1626 1 457 WRKY Transcription Factor Family AT2G34830 39.630 5.26e-86 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal5g1626 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1626 - - aprc:113852911 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1626 5 18648976 18653429 Lal3g0158 3 1041560 1046117 LSH
Lal5g1626 5 18648976 18653429 Lal11g0299 11 2135181 2138794 LSH