Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1612 ATGGTTCTGCATTTTACATTTCACATAATCATTTTCATAATATTGCCTCTATATTCATTAGCAGCAGATTTTATTATAGCACAACCTGGTTGTGATTCAGCATGTGGACATGTCTCCATCCCTTATCCATTTGGAATGAAAGATCCAAATTGCTATGTGGACAAGTGGTTTGAGATAGAATGCAGATACGATAGTACTTATAATTCTGGTTATACACCTTACCTTAAATCTCTGAATTTGGAGGTGTCAACCCTTGGTTTTAATGAGTATATTATTTCGATATGGAATCCAATCTTCTATTCGAATTGCGATGGTAAAAGTAATAAGCCAGTCATAGACCTGAAAGGAAGTCCTTTCAGGTATTCCCAAGAAATGAACACGTTTATGGCCTATGGTTGCAGCAAACTTGCTTTTATGCAATCAGATGGGTCAACAATTGGTGGTTGTGTCTCCATTTGTGATGGCAGTAGCCAAACCTTCAACAATTGCAACGGCATCTCCTGCTGCCAGACTTCACTACCTTTGCACCTTTCAGAATATAATGTAACACTTTCAGATCTTAATAACATAAGTATGAGTGATGACTGCAATTATGCCTTCATCGCATATCGAAATGCGTACCAATATGACCAAAATGAGTTTAATATAAATGGTCTAGTTCGTGCTGTACTTGAGTGGGAGATTGTTAACGATGTGATGAGCAATAAGTCCAACCAGTTATACCTTAATGTGAATCACTCTTCAAATTCCCACTGCTATACCTCAAGTATTACTTCTTCCTCACAAAACAAAACCTCAGGTTGGATATGTAAGTGTAATGATGGCTTCTATGGCAATCCCTACATTTATGGAAGCTGCGCCAGTCAAGGTACATCTAGGAAGTCTAATCATTCCAAAAAGTGGGCTATAGTAGGAGTTTCGTCAGGCCTGGGATCTGTTATTTTACTCTATGGTCTATGGTGGACATATAAAGCTGTAAGGAGAAGAGTGATAAAGAACCGCAAAGAAAAGTTCTTCAAACGAAACGGAGGTTTGTTGTTACAACAAAGATTGTCTTCTGCAGATATTAGTGTTCACAAAATACTCTATACCTTAAAGGACATAGAAAAGGCCACAGACAATTTTAATACGAATAGAGTTCTTGGAAAGGGGGGACAAGGTACAGTTTACAAAGGCATGCTAGTCGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTCCAAGGAAAGGTTGAAGAATTCATCAATGAATTTGCTGTTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAGACAAAAATTCCTTTGCTTGTTTATGAATTCATTCCCAATGGCAACCTTTTCGAATATTTACATGTCCATAATGAAGAGTTGCCAGTGACATGGGATATTCGTTTAAGAATTGCAAAGGAAATTGCAGGAGCTCTATTTTACCTACATTCTATTGCTTCTCAGCCCATTTATCATAGAGACATAAAATCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAAGTAGCAGACTTTGGAACTTCAAGAGTAGTTTCCATAGAAGCTACTCACCTCACAACAGTAGTTCAAGGTACTTTTGGTTACTTGGATCCTGAATACTTTCATACAAGTCAATTTACAGATAAAAGTGATGTCTACAGTTTTGGTGTAGTTCTTGCGGAGCTTTTAACTGGTAAAAAGCCAATATCTTTGTTAAATTGTGAGGAAGCAAGGAATTTAGCTTCATATTTTGTTCTCTCTATGGAGGAGAATCAGTTGTTTGAGATTATTGACAAAAGAGTGGCAGATGAAGCACAGAAAGAACAGATCACTGCAGTTGCCAATCTTGCATTTACATGTTTAGAGTTGAATGGGAGAAAACGACCAAATATGAAAGAAGTCACATTGGAACTAGAAAGGATACAAGGGCAAGATAGAAGGTTTAGTGCAAAGCAAAACCATGAAGAATTAGAGCTTGCAAGAACTGAAGACAACCAATCTTTTGATGGATATTCTATGTCTAATACGTTGTCCATTATCAACAGTGAAACAGATGTTATGCCCATTCTTAAATCAAATAGTTCATGA 2103 0.3671 MVLHFTFHIIIFIILPLYSLAADFIIAQPGCDSACGHVSIPYPFGMKDPNCYVDKWFEIECRYDSTYNSGYTPYLKSLNLEVSTLGFNEYIISIWNPIFYSNCDGKSNKPVIDLKGSPFRYSQEMNTFMAYGCSKLAFMQSDGSTIGGCVSICDGSSQTFNNCNGISCCQTSLPLHLSEYNVTLSDLNNISMSDDCNYAFIAYRNAYQYDQNEFNINGLVRAVLEWEIVNDVMSNKSNQLYLNVNHSSNSHCYTSSITSSSQNKTSGWICKCNDGFYGNPYIYGSCASQGTSRKSNHSKKWAIVGVSSGLGSVILLYGLWWTYKAVRRRVIKNRKEKFFKRNGGLLLQQRLSSADISVHKILYTLKDIEKATDNFNTNRVLGKGGQGTVYKGMLVDGKIVAVKKFKVQGKVEEFINEFAVLSQINHRNVVKLLGCCLETKIPLLVYEFIPNGNLFEYLHVHNEELPVTWDIRLRIAKEIAGALFYLHSIASQPIYHRDIKSTNILLDEKYRAKVADFGTSRVVSIEATHLTTVVQGTFGYLDPEYFHTSQFTDKSDVYSFGVVLAELLTGKKPISLLNCEEARNLASYFVLSMEENQLFEIIDKRVADEAQKEQITAVANLAFTCLELNGRKRPNMKEVTLELERIQGQDRRFSAKQNHEELELARTEDNQSFDGYSMSNTLSIINSETDVMPILKSNSS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1612 700 Pfam Wall-associated receptor kinase galacturonan-binding 31 75 IPR025287 GO:0030247
Lal5g1612 700 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 21 690 - -
Lal5g1612 700 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 690 IPR045274 GO:0007166
Lal5g1612 700 ProSiteProfiles Protein kinase domain profile. 375 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1612 700 SMART serkin_6 375 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1612 700 Gene3D Phosphorylase Kinase; domain 1 344 448 - -
Lal5g1612 700 SUPERFAMILY Protein kinase-like (PK-like) 359 641 IPR011009 -
Lal5g1612 700 Pfam Protein kinase domain 376 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1612 700 Gene3D Transferase(Phosphotransferase) domain 1 449 672 - -
Lal5g1612 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Lal5g1612 700 CDD STKc_IRAK 381 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1612 Lal-Chr5 18566857 18569472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1612 12 647 Receptor kinase-like Gene Family AT1G69730 42.857 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lal5g1612 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1612 - - lang:109329470 1053.51