Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1605 ATGAATTCTTCAATGGGAGGTGCTAGTGGTTCAATGGGAGGTGCTAGTGGTTCAGGTGATAGAGATTTCCCCGGCTCGATGATGGGAAATCATCCTTCCTACCAACGTCTTAGTTTGGCACAAAAAGCTGCTCTTGAGAGATTTATGATAGACTACCCCCATCCAACCGAAAGGCAACGACATCAGTTAGCTGCTGAGATCGGTTTGGAGCCAAAACAAATAAAGTTTTGGGTCCAAAACAAGAGGATGCAAATTAAGAATCAAAATGAAAGAGCAGATAACAAAGCATTGCGGATTGAGAATTCAAGGATACAAAATGAAAACCAACTTATAAGAGAAACAATGATGAACATTCTCTGTCCAGTTTGTAGAGGCTTAGCATGTCGAGAAGAAGAACATGCACAATTTAACCAAAGAATGCGACTTGAAAATGAGAGGCTAAGGGATCAGTGTGCTAGAGTATCTGCACTTCTTCAAAGGTATTTGGAGAAACAAATTTCACAACATGAGTTGCAGGCTCTTTTAAATGCAACCATGGGTTCTTCATCACAAGCTCCAATGGTTGGAAGTTCAATAAACCAAGGAGTTGCTGAACTTCCTAATAATAATGTAAACTTTGGACCACAAAACTTGCATCAAGAAATGTTATTACCAAATCAAATGATGTCAAGTAATACTGCTGATATGGAAAACAGAATGATGGTGGAGGTTGGAAATGCTGCTATGGATGAATTAGTCAAGCTTATGCATATGAATGAACCCATATGGATAAATTCTTCACTTGGGGATGGGAAATTAATTCTTAGTCGTGAAGACTATGAAAAAACATTTCTCAGGACTAGACACTTCAATGTTCCTAATGTTCATGTAGAGTCGTCAAAATCCTCAACAGTAGTGAACATGAGTCCTATGAAATTGATTGACATGTTTCTGGATTCTGATAAATGGGCTAATCTATTCCCAACAATTGTGACAAAAGCAGAAATAGTTCATGTAGTTCAACCTGGTTTGTTATACAATCGAAGTGGAGCACTACAATTGATGTATGAAAAAATGCATACTCTTTCACATTTAGTGCCATCTCGTGAATTTTGCTTCCTTCGCTATTGTCAACAAGTTGGAGTTGATGAATGGGTTATTTGTGATGTTTCCTATGATATCTTTGGAAACAATAATAACCCTATTTCTGGATGTTGGAGACACCCATCAGGATGCATGATTCAGGATATGCATAATGGTTGTTCCACGGTCACATGGATTGAACACGTGGAAGTGGATGATAGGAGTCAAACACATGCTCTATACAATGATCTTGTATGTAGCAGTGTTGCATATGGAGCTGAGAAATGGATTGTGGAACTTAGAAGAATGTGTGAGAGATTTTCTCTCTACAGCATTGAAGGAATACCTGATCAGGAAGAAGTTGGAGGAGTGATTAATACAATGAAAGGAAAGAGGAGCGTGATGAATATTTCGGAAAGAATGGTCAAAATCTTCTGTGAAAATTTAACCATTCCATATAATCTAGACATGCAAAATATAACTGGGGAGGAAAATAGTGAGGTTAAGATTTCCATCCGAAAATGCACAGAACTAGGTCAACCACATGGCATGGTTGTGGTTGCTATCACATCATTTTGGATTCCTCTACCTTATCAACAGGTTTTTGAGTTCCTCACAGATGATAACAAAAGACATCAGTGGGATGTTCTTTCTGATGGTACTCCAGTGCAAAGGGTTGTACAAATCTCAAATGGATCTCACCCTAGCAACTATACTTCAATTATTCAGCCATTCGCCCCCAGTGAGAACAACATGTTGATTCTTCAAGAAAGCTTCACAGATCCAACAGGATCTTATGTTGTGTTTGCTCCAGTAGATGTAACAGCATTAGAAGCAGCACTAAATGATGAAGAATCAACAATGATATCTGTTCTTCCATCTGGTTTTGTCATATCTGGAGATGGAAAATCAAATACAGCTTCAGGAACAATGAACAACACAGATGCTGAAACATCAAGAAGAGGAGCAGAAGGCTCATTGTTAACAGTGGCTTTGCAAGTATTGGTGTGTTCTCTATCAGAAATTGCAGGGCTAGATATGAGATCTGTCACAAAGGTCAATACCATTTTAGCCTCAGTAGCTTCAAATGTGAAGAATGCTTTGAATATAAACAATGCTGAGTAA 2187 0.3841 MNSSMGGASGSMGGASGSGDRDFPGSMMGNHPSYQRLSLAQKAALERFMIDYPHPTERQRHQLAAEIGLEPKQIKFWVQNKRMQIKNQNERADNKALRIENSRIQNENQLIRETMMNILCPVCRGLACREEEHAQFNQRMRLENERLRDQCARVSALLQRYLEKQISQHELQALLNATMGSSSQAPMVGSSINQGVAELPNNNVNFGPQNLHQEMLLPNQMMSSNTADMENRMMVEVGNAAMDELVKLMHMNEPIWINSSLGDGKLILSREDYEKTFLRTRHFNVPNVHVESSKSSTVVNMSPMKLIDMFLDSDKWANLFPTIVTKAEIVHVVQPGLLYNRSGALQLMYEKMHTLSHLVPSREFCFLRYCQQVGVDEWVICDVSYDIFGNNNNPISGCWRHPSGCMIQDMHNGCSTVTWIEHVEVDDRSQTHALYNDLVCSSVAYGAEKWIVELRRMCERFSLYSIEGIPDQEEVGGVINTMKGKRSVMNISERMVKIFCENLTIPYNLDMQNITGEENSEVKISIRKCTELGQPHGMVVVAITSFWIPLPYQQVFEFLTDDNKRHQWDVLSDGTPVQRVVQISNGSHPSNYTSIIQPFAPSENNMLILQESFTDPTGSYVVFAPVDVTALEAALNDEESTMISVLPSGFVISGDGKSNTASGTMNNTDAETSRRGAEGSLLTVALQVLVCSLSEIAGLDMRSVTKVNTILASVASNVKNALNINNAE 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1605 728 Coils Coil 137 164 - -
Lal5g1605 728 MobiDBLite consensus disorder prediction 657 674 - -
Lal5g1605 728 ProSiteProfiles START domain profile. 227 463 IPR002913 GO:0008289
Lal5g1605 728 Gene3D - 235 459 IPR023393 -
Lal5g1605 728 SUPERFAMILY Bet v1-like 228 461 - -
Lal5g1605 728 MobiDBLite consensus disorder prediction 657 676 - -
Lal5g1605 728 SMART START_1 236 460 IPR002913 GO:0008289
Lal5g1605 728 SUPERFAMILY Bet v1-like 484 658 - -
Lal5g1605 728 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 29 724 IPR042160 -
Lal5g1605 728 Pfam Homeodomain 36 86 IPR001356 GO:0003677
Lal5g1605 728 MobiDBLite consensus disorder prediction 1 32 - -
Lal5g1605 728 ProSiteProfiles 'Homeobox' domain profile. 36 88 IPR001356 GO:0003677
Lal5g1605 728 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Lal5g1605 728 CDD homeodomain 35 89 IPR001356 GO:0003677
Lal5g1605 728 Gene3D - 27 96 - -
Lal5g1605 728 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 29 724 - -
Lal5g1605 728 Pfam START domain 239 460 IPR002913 GO:0008289
Lal5g1605 728 SUPERFAMILY Homeodomain-like 16 89 IPR009057 -
Lal5g1605 728 SMART HOX_1 30 92 IPR001356 GO:0003677
Lal5g1605 728 CDD START_ArGLABRA2_like 233 459 - -
Lal5g1605 728 Coils Coil 80 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1605 Lal-Chr5 18529948 18534668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1605 34 723 Homeobox Transcription Factor Family AT1G73360 40.000 1.23e-166 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal5g1605 START 9.4e-35 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1605 K09338 - gmx:100795075 748.043