Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1603 ATGGCTTCTTATTCTTCTTCTTCTTCTTCTAGAATTGGTAGTGATGGGAGGGATGTTCAACGAGAAGGTTCGAACTCTCATGAGAGAAAGAGAGCTAGGGGTTCTTCTGGTACTTGCTTGCGTCACACTCCTCACCAAATTGCAAAGCTTGAAGAATTTTTCAAACAGCAGTCTAGTCCAAATGATCACCAAAGAAGACAAATAGCCGAGGAGCTAAAACTTGAGCCAAGACAAATAAAGTTTTGGTTTCAGAATAAGAGGACTAAAAAAAAGGCTGAAATGGAGCGAGAACAGAGTGATGCTCTTCGTGCTGAGAATTTTAGAATCCAGATGGAGACCTTCATAATGATTGAGCAGTTGAAGACTATAAAATGCTCATCTTGTGGGAACTCATGCTGTCAAAAGTTTGAAAAGCAAAACAATGTGGAGCAACTTAAGCTTGAAAATGCACGTCTGAAAGATGAGGCTAGTAAACTATATATATACTTTGATTCATTTTACTATTTATTGTTTAAGACTGATAACTTGTGA 531 0.3785 MASYSSSSSSRIGSDGRDVQREGSNSHERKRARGSSGTCLRHTPHQIAKLEEFFKQQSSPNDHQRRQIAEELKLEPRQIKFWFQNKRTKKKAEMEREQSDALRAENFRIQMETFIMIEQLKTIKCSSCGNSCCQKFEKQNNVEQLKLENARLKDEASKLYIYFDSFYYLLFKTDNL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1603 176 Coils Coil 85 105 - -
Lal5g1603 176 Coils Coil 133 155 - -
Lal5g1603 176 Pfam Homeodomain 41 91 IPR001356 GO:0003677
Lal5g1603 176 MobiDBLite consensus disorder prediction 15 35 - -
Lal5g1603 176 CDD homeodomain 41 91 IPR001356 GO:0003677
Lal5g1603 176 Gene3D - 16 100 - -
Lal5g1603 176 SUPERFAMILY Homeodomain-like 38 96 IPR009057 -
Lal5g1603 176 ProSitePatterns 'Homeobox' domain signature. 68 91 IPR017970 GO:0000981|GO:0006355
Lal5g1603 176 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG8 36 161 - -
Lal5g1603 176 MobiDBLite consensus disorder prediction 1 41 - -
Lal5g1603 176 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 36 161 IPR042160 -
Lal5g1603 176 ProSiteProfiles 'Homeobox' domain profile. 43 93 IPR001356 GO:0003677
Lal5g1603 176 SMART HOX_1 29 97 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1603 Lal-Chr5 18514517 18515889 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1603 13 164 Homeobox Transcription Factor Family AT3G03260 41.447 1.61e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lal5g1603 Homeodomain 9.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1603 K09338 - egr:104452001 138.658