Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1602 ATGGATTCTTCAAATGGAGGTGCTAATGGTTTTGGTAAAAGAGACAACCAAAACTCATTGAGGAGAGAAAAACCTTCATACAAACGTCTTAGTCCGAAACAAGTAGACATTCTTGAAAAATTCATGAAGGAGTGCCCCCACCCAGACGAAAGCCAAAGGCTTCAATTAGCTGCTGAAGTTGGAATTGAACCTAAACAAATCAAATTTTGGTTTCAAAATAAGAGGACCCAAATGAAGAATCAACATGAAAAGGAAGACAACAATGCTTTACGGATTGAGAATGATAATATTAGAAATGAAAACCGGGAAATGCGAGAGATATTGAAGAACGTTGTTTGTCCATATTGTGGAGGTCCATTGTGTAGGGACAATGAGCATGAACATTATGTGCATGCAATGCTTCTCGAAAATGATGTGCTCAGGGCTAAGTATGAGAGCGTTTATAACTTTCTTTCAACTTACTTGGGGAACCATATGTCACAACCTGAATTGCATGCTGTTCTAAGTGCTACCATAGGATCTTCATCATATGCTCCAGCATTTGCAAATTCAGTAAACCAACAAGCTATTGATCAAGTTCCTATTCTGAATCAAAATTTCCCTTCACAATTTGTGGCTGGTGATATGTTATTGCCCGAGGTTTCCACCATTTTAAGTACTGATACGCATAAAGCACTAATGATAAAGGTTGCAACAACTGCTATGGATGAATTGGTCAACCTTATGCATTCCAATGAATCCGTATGGATAAATTCTCCAAATTGGGATGGGAAATTCATTATTAGCCATGAGGTCTATGAAAAAATATTTCCTATGACTACTCACTTCAACGGTCCAAACATTCGTGTAGAATCTTCAAAAGGGTTAACAGTAGTAAACATGAGTGGGATGAACCTGGTTGACATGTTTCTGAATTCGGATAAGTGGGCCAACTGTTTCCCAACTATTGTTACGAAGGCAAAAACACTTCATGTAGTTGATAATGGTTTCTTAGAAAATCGAAGTGGAGCTTTGAAAATGATGTATGGAAAAATGCACACCATGTCACCTTTAGTGCCAGCTCGAGAATTCTGCTTCCTACGCCATTGTCAACAAATTGGAGCTGGTAAATGGGTGATAATGGATGTTTCATTTGATCCCTTTGGAGGCAACAACCCCATTTCTCACTGTTGGAGACTTCCCTCTGGATGCATGATTGAGGAAATGAATACTGGATGCTCCATGGTAACATGGATTGAACACGTTGAAGTGGATGATAAGATCCAAACCCATCCACTGTTCAATGATCTTGTCTATAGCAGTGCTGCATTTGGAGCAGAAAGGTGGCTGAAGGAACTGCAGAGAGTTTGTGAAAGATTGTCTCTCTACTATATTGACATGTTACCTAGTCATGATATTAGAGGAGTGATCAATTCATTTGAAGCAAGGAGGAGTATAATGAATCTTTCTCATAGAATGGTCAAAATCCTTTGTGAAAATTTGATCATCTCAGACAAACTTGAGTTCCCACAATTATCTAGTGAGAGAAATAGTGGGGTTAAGATATGTTTTCGCAAATGCATAGAACCAGGTCAACCAAATGGCATCATTATCGTTGCTGTGACCTCTCTATGGCTCCCTCTACCTTATCAACAGGTTTATAACTTCCTCACAGATGATACCAAGAGATTTCAGTGGGATGTTCTTTCCTATGGAAGTATGGCTCACAAGATTGCACAGATTTCAACTAGAAATCAGCCTGACAACTCTATTTCAATCATTCAGCCACTAGTCTCTAGTGAAGGTTTGTTGATCCTCCAAGAAAATTTCATAGATTCCATTGGATCGTATATTATATATGCTCCACTAGATGTAGCACCTTTAAATGTTGCCTTAAAGGGTGAAGACTCAACTTTGATTCCAATTCTCCCATCTGGTTTTGTGATTTCTGGAGATGGAAAACCAAATGCAACTTTTGGAGCATCAAGCAGTAGATATGTTGAAAGATCAGGTTCATTGCTGACAATTGCTTTGCAAACTTTGATTTGTTCTCTACCTGGAATTGTGAATCTGGACATGGAATCTGTGTCAAAGGTTAATGATGTTTTGACCTCAACAACTGAAAAAATAAAGATTGCTCTGAATTGTACCAGTTTTGAGTAA 2142 0.3847 MDSSNGGANGFGKRDNQNSLRREKPSYKRLSPKQVDILEKFMKECPHPDESQRLQLAAEVGIEPKQIKFWFQNKRTQMKNQHEKEDNNALRIENDNIRNENREMREILKNVVCPYCGGPLCRDNEHEHYVHAMLLENDVLRAKYESVYNFLSTYLGNHMSQPELHAVLSATIGSSSYAPAFANSVNQQAIDQVPILNQNFPSQFVAGDMLLPEVSTILSTDTHKALMIKVATTAMDELVNLMHSNESVWINSPNWDGKFIISHEVYEKIFPMTTHFNGPNIRVESSKGLTVVNMSGMNLVDMFLNSDKWANCFPTIVTKAKTLHVVDNGFLENRSGALKMMYGKMHTMSPLVPAREFCFLRHCQQIGAGKWVIMDVSFDPFGGNNPISHCWRLPSGCMIEEMNTGCSMVTWIEHVEVDDKIQTHPLFNDLVYSSAAFGAERWLKELQRVCERLSLYYIDMLPSHDIRGVINSFEARRSIMNLSHRMVKILCENLIISDKLEFPQLSSERNSGVKICFRKCIEPGQPNGIIIVAVTSLWLPLPYQQVYNFLTDDTKRFQWDVLSYGSMAHKIAQISTRNQPDNSISIIQPLVSSEGLLILQENFIDSIGSYIIYAPLDVAPLNVALKGEDSTLIPILPSGFVISGDGKPNATFGASSSRYVERSGSLLTIALQTLICSLPGIVNLDMESVSKVNDVLTSTTEKIKIALNCTSFE 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1602 713 SUPERFAMILY Homeodomain-like 24 88 IPR009057 -
Lal5g1602 713 MobiDBLite consensus disorder prediction 16 32 - -
Lal5g1602 713 CDD START_ArGLABRA2_like 224 451 - -
Lal5g1602 713 MobiDBLite consensus disorder prediction 1 15 - -
Lal5g1602 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 709 IPR042160 -
Lal5g1602 713 Pfam Homeodomain 27 80 IPR001356 GO:0003677
Lal5g1602 713 ProSiteProfiles START domain profile. 220 455 IPR002913 GO:0008289
Lal5g1602 713 Coils Coil 80 110 - -
Lal5g1602 713 Gene3D - 10 95 - -
Lal5g1602 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 19 709 - -
Lal5g1602 713 SUPERFAMILY Bet v1-like 476 648 - -
Lal5g1602 713 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Lal5g1602 713 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Lal5g1602 713 Pfam START domain 230 452 IPR002913 GO:0008289
Lal5g1602 713 MobiDBLite consensus disorder prediction 1 32 - -
Lal5g1602 713 SUPERFAMILY Bet v1-like 220 453 - -
Lal5g1602 713 Gene3D - 228 451 IPR023393 -
Lal5g1602 713 SMART START_1 229 452 IPR002913 GO:0008289
Lal5g1602 713 CDD homeodomain 29 82 IPR001356 GO:0003677
Lal5g1602 713 SMART HOX_1 23 85 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1602 Lal-Chr5 18489981 18494144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1602 22 708 Homeobox Transcription Factor Family AT1G73360 39.372 1.12e-166 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal5g1602 START 1.4e-33 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1602 K09338 - gmx:100795075 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1602 5 18489981 18494144 Lal3g0172 3 1137509 1142354 LSH