Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1594 ATGTCAGTGAATAATTATCTTGGAAGGCCTGCATCAGATACATGTAGTTCTGAAGAGGTTTCAGAAAATGACTACATGGTTATGACTTGCAACTCTCTCTGGTCTTTTACAGGTAGAAGAAGATTGAAAGATTTATTGCTTCAAAAAGATAATCACTTTTGTGCCGATTGTAATGCTACAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTTATATGCTTAAAATGCTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACACTGGATGAATGGTCAGATGATGAAATAGATGCAATGATTGAAGTTGGGGGAAACTCCTCTGCTAATTCTATTTACGAGGCTTATATTCCTGAAGGATATACCAAGCCCGGACCAGATGCTAGTCACGAGCACCGGGCAAAGTTTATACGATCAAAGTATGAGCATCAAGAATTTTTGAAACCTAGTTTACGCATTGTGTCTGGAAAAAGCAGTATAGGATCAAGCTCTTCCAAAAGTTTCCTGGATGGTTTTCGAACTACTAGTACTAGTTCACAGAATATGGAAGGTATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAAATTTGGCTATCAGAGATATAAAGTCAAGTGACCCGTATGTTGTTTTGAATATTGGCCAACAGACCGTGCAGACATCTATAATCAGGAGTAACTTGAACCCAGTCTGGAATGAGGAACATATGCTGTCTGTTCCCGAGCAATATGGACCACTTAAATTGAAAGTATTTGATCACGACACGTTTTCTTCTGATGATATAATGGGAGAAGCAGACATTGATCTTCAGCCCTTGATAACATCTGCTACAGCATTTGGAGATGCTGGAATGTTTGGCAATATGCAGATAGGAAAATGGCTGAAATCTTCTGACAATGCACTTATCGAAGATAGCACAGTGAATATCGTTGACGGTGCGGTTAAACAAGCGATGACAATCAAGCTCCAGAATGTTGAATCTGGAGAATTAGACTTAGAACTGGAATGGATTCCTCTTGATCAATAG 1062 0.3917 MSVNNYLGRPASDTCSSEEVSENDYMVMTCNSLWSFTGRRRLKDLLLQKDNHFCADCNATDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEIDAMIEVGGNSSANSIYEAYIPEGYTKPGPDASHEHRAKFIRSKYEHQEFLKPSLRIVSGKSSIGSSSSKSFLDGFRTTSTSSQNMEGMVEFIGMLKVKVIKGTNLAIRDIKSSDPYVVLNIGQQTVQTSIIRSNLNPVWNEEHMLSVPEQYGPLKLKVFDHDTFSSDDIMGEADIDLQPLITSATAFGDAGMFGNMQIGKWLKSSDNALIEDSTVNIVDGAVKQAMTIKLQNVESGELDLELEWIPLDQ 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1594 353 Gene3D C2 domain 195 353 IPR035892 -
Lal5g1594 353 PRINTS HIV Rev interacting protein signature 51 70 IPR001164 GO:0005096
Lal5g1594 353 PRINTS HIV Rev interacting protein signature 70 87 IPR001164 GO:0005096
Lal5g1594 353 PRINTS HIV Rev interacting protein signature 91 112 IPR001164 GO:0005096
Lal5g1594 353 SUPERFAMILY ArfGap/RecO-like zinc finger 39 156 IPR037278 -
Lal5g1594 353 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 193 290 IPR035892 -
Lal5g1594 353 Pfam Putative GTPase activating protein for Arf 40 155 IPR001164 GO:0005096
Lal5g1594 353 Pfam C2 domain 198 287 IPR000008 -
Lal5g1594 353 SMART C2_3c 198 293 IPR000008 -
Lal5g1594 353 CDD C2_ArfGAP 196 340 - -
Lal5g1594 353 SMART arf_gap_3 39 161 IPR001164 GO:0005096
Lal5g1594 353 CDD ArfGap 42 148 - -
Lal5g1594 353 ProSiteProfiles ARF GTPase-activating proteins domain profile. 39 153 IPR001164 GO:0005096
Lal5g1594 353 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 36 353 IPR044518 GO:0005096|GO:0005543
Lal5g1594 353 Gene3D Arf GTPase activating protein 34 159 IPR038508 -
Lal5g1594 353 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 36 353 - -
Lal5g1594 353 ProSiteProfiles C2 domain profile. 179 294 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1594 Lal-Chr5 18418624 18423032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1594 37 353 C2H2 Transcription Factor Family AT4G21160 72.615 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1594 K12486 - gmx:100810806 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1594 5 18418624 18423032 Lal5g1594 5 18418624 18423032 ECH
Lal5g1594 5 18418624 18423032 Lal3g0177 3 1193111 1197656 LSH