Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1590 ATGGCACTATCTATGCACAAAGACAATAACAACATCATGGATTCAAGCAAATATGTGAGGTACACACCAGAACAAGTAGAGGCTTTGGAAAGGGTCTATGCTGAATGTCCTAAACCAAGTTCTTTAAGGAGGCAACAACTCATTAGGGAGTGTCCTATACTCTCTAACATTGAGCCTAAGCAGATCAAAGTCTGGTTTCAGAATCGAAGATGTCGTGAGAAGCAAAGGAAGGAAGCTTCTCGTTTACAAACAGTGAATAGAAAGCTATCTGCAATGAACAAGCTATTGATGGAAGAGAATGATCGTCTGCAGAAACAAGTCTCTCATCTGGTTTATGAAAATGGTTACATGAAACAACAGATAACCACTGTATCTGCTGCTACCACCACAGACAATAGCTGTGAGTCTGTGGTGATGACTGGTCAAAACCAACAGCAAAATATAACACCTCATCAGCATCCTCAAAGGGATGCTAACAACCCAGCTGGTCTTCTCACCATCGCCGAGGAGACCCTGGCAGAGTTCCTGTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGCATAGTTGCTGTTTCTCGCAATTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTTGTGAGTCTAGAACCCACCAAGGTTGCCGAGATTCTTAAAGATCGACTGTCATGGTATCGTGACTGCCGATGCCTTGATGTGTTGAGCATAGTCCCCACAGGAAATGGAGGCACAATAGAGCTCATGTACATGCAGACTTATGCGCCAACAACATTGGCAGCAGCGCGTGACTTCTGGACACTAAGATACACCACAAGTTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCATTGACTACTTCAACTGGTGGCCCTACAGGGCCCCCATCTTCAAACTTTGTAAGAGCTGAAATGCTTCCTAGTGGCTATCTAATCAGACCCTGTGATGGTGGTGGATCCATTATTCATATTGTTGATCATATTGATTTAGACGTCTGGAGTGTCCCTGAAGTACTGAGGCCTCTCTACGAGTCGTCTAAAATCTTGGCTCAGAAATTGACTATTGCTTCCTTGCAACACATTAGACAAATAGCACAAGAATCAAGTGGAGAAATTCAGTATGGTGGGGGACGCCAGCCCGCTGTTTTAAGGACATTGAGTCAGAGACTTTGCAGGGGTTTTAATGATGCTGTGAATGGGTTTGTTGATGATGGTTGGTCTCTGATGGGTAATGATGGGGTCGAAGATGTGACTATAGCCGTAAACTCATCCCCCAACAAATTTTTAGGGTCCCAGTACAATTCGTCAATGTTCTCATCATTTGGAGGTGGGGTCCTGTGTGCCAAAGCATCAATGCTACTTCAGAATGTTCCTCCTCCTTTGCTTGTTCGATTTTTGAGGGAGCATCGATCAGAGTGGGCTGATTATGGGGTTGATGCATATTCTGCTGCATGTCATAAAGCTAGTCCCTATGCAGTTCCTTGTGCTAGACCTGCTGATTTTCCCACCAGTCAGATCATTTTACCTCTCGCCCATACAGTTGAACACGAGGAGTTCTTGGAGGTAGTCCGTATAGAGGGTCATGCATTTCCCCCTGATGATGTGTCATTGGCGCGGGATATGTATCTTCTGCAGCTGTGCAGCGGGGTTGATGAAAATTCGATTGGGGCTTGTGCTCAACTTGTTTTTGCTCCTATTGATGAATCATTTGCTGATGATGCTCCTTTACTGCCTTCTGGTTTTCATGTCATACCATTGGCTCCTAAAACAGATACTCCGGCCACAACTAGGACATTGGATTTGGCATCAACGCTTGAAGTAGGATCTGGTAGTATTCGTCCAGGTGGTGAAACTGATTACAACCTTAGGTCGGTCCTTACTATTGCATTCCAATTTACCTTCGAGAACCATCTGCGAGACAATGTCGCTGCTATGGCTCGCCAGTATGTGCGGAGTGTTGTGGGATCTGTTCAAAGGGTAGCCATGGCAATTGCTCCTGCTCGTCTCAGTACCCAACTGGTGCCAAAGTCTCTTCCTGGTTCACCAGAGGCTCTTACTTTAGCTCGTTGGATTTGTAGAAGCTACAGGATCCATACCGGTGCAGAACTCTTTCGAGTTGAGTTGACATCTGGTGATGCAATCTTGAAGCAACTCTGGCACCATTCTGATGCAATCATGTGTTGTTCTGTAAAAACAAATGCTTCTCCAGTGTTCACCTTTGCAAACCAGGCTGGACTTGACATGCTTGAAACTACTCTAGTTGCCCTTCAAGATATAATGCTTGATAAAGTTCTTGATGAAGCTGGTAGAAAAGTCCTTTGCTCTGAGTTCTCCAACATAATGCAACAGGGATTTGCATATCTGCCATCAGGAATATGTGGATCCAGTATGAGTCGTCCAGTATCTTATGAACAAGCCATTGCATGGAAAGTTCTCAATGATGATGATTCCAATCACTGTTTGGCTCTTATGTTCATGAACTGGTCTTTTGTATGA 2532 0.4506 MALSMHKDNNNIMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMKQQITTVSAATTTDNSCESVVMTGQNQQQNITPHQHPQRDANNPAGLLTIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLDVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTTSTGGPTGPPSSNFVRAEMLPSGYLIRPCDGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIASLQHIRQIAQESSGEIQYGGGRQPAVLRTLSQRLCRGFNDAVNGFVDDGWSLMGNDGVEDVTIAVNSSPNKFLGSQYNSSMFSSFGGGVLCAKASMLLQNVPPPLLVRFLREHRSEWADYGVDAYSAACHKASPYAVPCARPADFPTSQIILPLAHTVEHEEFLEVVRIEGHAFPPDDVSLARDMYLLQLCSGVDENSIGACAQLVFAPIDESFADDAPLLPSGFHVIPLAPKTDTPATTRTLDLASTLEVGSGSIRPGGETDYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVGSVQRVAMAIAPARLSTQLVPKSLPGSPEALTLARWICRSYRIHTGAELFRVELTSGDAILKQLWHHSDAIMCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKVLCSEFSNIMQQGFAYLPSGICGSSMSRPVSYEQAIAWKVLNDDDSNHCLALMFMNWSFV 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1590 843 SUPERFAMILY Bet v1-like 167 378 - -
Lal5g1590 843 Coils Coil 82 106 - -
Lal5g1590 843 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Lal5g1590 843 SMART START_1 166 376 IPR002913 GO:0008289
Lal5g1590 843 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Lal5g1590 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 843 - -
Lal5g1590 843 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 843 IPR044830 GO:0003700
Lal5g1590 843 SMART HOX_1 14 80 IPR001356 GO:0003677
Lal5g1590 843 Pfam MEKHLA domain 698 842 IPR013978 -
Lal5g1590 843 CDD bZIP 69 108 - -
Lal5g1590 843 Gene3D - 183 378 IPR023393 -
Lal5g1590 843 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Lal5g1590 843 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Lal5g1590 843 CDD homeodomain 17 77 IPR001356 GO:0003677
Lal5g1590 843 CDD START_ArGLABRA2_like 161 377 - -
Lal5g1590 843 Pfam START domain 167 374 IPR002913 GO:0008289
Lal5g1590 843 Gene3D - 10 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1590 Lal-Chr5 18389605 18395151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1590 1 843 Homeobox Transcription Factor Family AT2G34710 78.037 0.0 1368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal5g1590 START 4.4e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1590 K09338 - gmx:100807428 1529.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1590 5 18389605 18395151 Lal5g1590 5 18389605 18395151 ECH
Lal5g1590 5 18389605 18395151 Lal3g0179 3 1204377 1209314 LSH
Lal5g1590 5 18389605 18395151 Lal11g0321 11 2326174 2331388 LSH