Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1582 ATGGAGGATACGGATGGAGTCCTCAACTTCGATTTTGAGGGCGGCCTCGACGCCGCTCCACCCTCCGCCGCCACTGCCACCGTCCCATCCGCTGCCGCTTCATCCGGACCTCTTATCCACCACGATGCCTCTGCTGCCGCTTCCTCCATGGCCAACGGAAGTGCCGTCGGCATAACCCCTCACTCCGCTGCTGATCACCCCTCTGGCAACATACAAGGGCGGCGGAGCTTTCGGCAGACGGTATGCCGGCACTGGCTTCGAAGCCTGTGTATGAAAGGAGACGCGTGCGGGTTCCTTCACCAGTATGATAAGGCTAGGATGCCGGTGTGCCGGTTTTTTCGGCTTTATGGGGAGTGCCGGGAGCAGGATTGTGTTTATAAACACACCAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCCAATGGGCCTGATTGCCGATATAGACATGCAAAATCTGCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAGCATTTGTATTCTTACAATTATAATGGTTCTAACAAATTTTTCCAACAAAGGGGTGCTAGCTATAACCAACAAGTTGAAAGATCTCAGTTTCCTCAAGGAGTTAATTCTACAAATCAAGGTGTGACTGCAAAACCCTTAGCAGCAGAGTCAGGTAATGCCCAGCAGCAGCAGCAAGTTCAACAATCGCAGCAGCAGGTCAGCCAGAGCCAAATGCAAAGTCCTGCTAATGGTCAGCCCAATCAAGCCAATAGAACAGCAATCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATCTTGAGTTATCTGTGCAACAAGGAGTATGGGCAACACAAAGGAGCAATGAATCCAAACTAAATGAAGCCTTTGACTCTGTGGAAAATGTGATATTGATTTTTTCAGTCAATCGAACACGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCAGGGGGGAATTGGAAATATGCTCATGGAACTGCACATTACGGGCGAAATTTTTCTGTTAAATGGTTAAAGTTATGTGAACTGTCATTCCACAAAACTCGCCACTTACGGAATCCATACAATGAGAACCTACCAGTGAAGATAAGTAGAGATTGTCAAGAGTTGGATCCCTCAATTGGTGAGCAATTAGCATCCTTGCTTTATATTGAGCCAGATAGTGAACTCATGGCTATCTCAATTGCAGCAGAGACTAAACGAGAAGAAGAAAAGGCAAAGGGAGTAAATCCCGATAATGCAGGAGAAAATCCAGATATCGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTCGGTCATGGTGTTGGGCCACCTAATCAAGGCAGAGGAAGGGGCCGAGGCATGATGTGGCCGCCTCACATGCCTCTTGGGCGTGGAGCAAGACCTATGCCTGGAATGCCAGGATTTAACCCAGGAATGGTGGGTGATGGATTACCCTATGGGCCTGATGGATTTGGTATGCCAGATCTTTTTGGTATGGGGCCCCGCGCTTTTGCCCCATATGGTCCTAGGTTCTCTGGTGATTTTGGAGGCCCACCAGCAGCCATGATGTTTCGTGGGCGACCCTCACAACCTGGGATTTTTCCTGGTGGTGGGTTTGGGATGATGATGAATCCTGGACGCCCTCCGTTTATGGGAGGGATGGGGGTGGGTGGTGGAAATCCGTCAAGAGGTGGTAGGCCGGTCAACATGCCTCCAATGTTTCCCCCACCTCCGCCCCCACCTCAGAATGCCAACCGAGTCCCCAAGAGAGATCAAAGAACCAATGACCGGACCGATAGGCATGGCTCAGGATCAGAGCAGGGCAGGAGTCAAGACATGCAGAGTCAAAGTGGCGGACCTGATGATGACATGCAATACCAGCAAGGATACAAGGCAAATCAAGATGATCAGAATGAAGATAGTGAAAGTGAGGATGAAGCACCGAGGCGGTCTCGACATGGAGAGGGGAAAAAGAAAAGGGACACATAG 2058 0.4893 MEDTDGVLNFDFEGGLDAAPPSAATATVPSAAASSGPLIHHDASAAASSMANGSAVGITPHSAADHPSGNIQGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSAGPPPPVEEVLQKIQHLYSYNYNGSNKFFQQRGASYNQQVERSQFPQGVNSTNQGVTAKPLAAESGNAQQQQQVQQSQQQVSQSQMQSPANGQPNQANRTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELDPSIGEQLASLLYIEPDSELMAISIAAETKREEEKAKGVNPDNAGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPPNQGRGRGRGMMWPPHMPLGRGARPMPGMPGFNPGMVGDGLPYGPDGFGMPDLFGMGPRAFAPYGPRFSGDFGGPPAAMMFRGRPSQPGIFPGGGFGMMMNPGRPPFMGGMGVGGGNPSRGGRPVNMPPMFPPPPPPPQNANRVPKRDQRTNDRTDRHGSGSEQGRSQDMQSQSGGPDDDMQYQQGYKANQDDQNEDSESEDEAPRRSRHGEGKKKRDT 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1582 685 ProSiteProfiles YTH domain profile. 266 401 IPR007275 GO:0003723
Lal5g1582 685 Pfam YT521-B-like domain 345 400 IPR007275 GO:0003723
Lal5g1582 685 Pfam YT521-B-like domain 266 328 IPR007275 GO:0003723
Lal5g1582 685 MobiDBLite consensus disorder prediction 440 458 - -
Lal5g1582 685 Gene3D ph1033 like domains 244 404 - -
Lal5g1582 685 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 683 IPR045168 -
Lal5g1582 685 MobiDBLite consensus disorder prediction 421 479 - -
Lal5g1582 685 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Lal5g1582 685 SUPERFAMILY CCCH zinc finger 76 107 IPR036855 GO:0046872
Lal5g1582 685 ProSiteProfiles Zinc finger C3H1-type profile. 76 103 IPR000571 GO:0046872
Lal5g1582 685 MobiDBLite consensus disorder prediction 630 657 - -
Lal5g1582 685 MobiDBLite consensus disorder prediction 666 685 - -
Lal5g1582 685 MobiDBLite consensus disorder prediction 573 685 - -
Lal5g1582 685 Coils Coil 224 244 - -
Lal5g1582 685 MobiDBLite consensus disorder prediction 591 608 - -
Lal5g1582 685 SMART c3hfinal6 104 130 IPR000571 GO:0046872
Lal5g1582 685 SMART c3hfinal6 76 102 IPR000571 GO:0046872
Lal5g1582 685 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Lal5g1582 685 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 683 - -
Lal5g1582 685 Gene3D - 68 134 - -
Lal5g1582 685 MobiDBLite consensus disorder prediction 220 258 - -
Lal5g1582 685 MobiDBLite consensus disorder prediction 612 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1582 Lal-Chr5 18317346 18326495 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal5g1582 YTH 8.6e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1582 K14404 - gmx:100802826 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1582 5 18317346 18326495 Lal5g1582 5 18317346 18326495 ECH
Lal5g1582 5 18317346 18326495 Lal3g0182 3 1230314 1237996 LSH