Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1571 ATGGCTCATTCAGCTGAACCTTCATCATCTTTGAGCTTTACATCATCTTTATCGAATGGTTCAGTCAACCACAACATGTGTACTTCTTATGGCCCTGATCCTGGTCTTAACCTTGATGTCATAAGTTTGAGTAAGCTTAGCTCTAATTTGGAGCAACTTCTGGTTGAATCTGATTCTGATTATAGTGATGCTGACATCGTAGTTGAAGGAATTCCAGTCGGTGTTCACCGATGTATCCTGGCCTCTAGGACTAAGTTTTTCAATGAATTATTCAAGAAAGAGAAAAATTCATCAGAAAAAGAAGGGAAATTGAAGTATTTCATGAGTGATATGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCAACATATTTCTAGGCTATGTATATACCGGAAAACTAAAGCCCTCTCCGACTGAGGTATCTACTTGTGTTGACAATGCGTGTCTTCACGATTCCTGTAGACCGGCAATTAACTTTGCTGTGGAGTTAATGTATGCCTCATCTATTTTTCAAATACCAGAGTTGGTATCACTTTTCCAGAGACGTCTTCTTAACTTTATAGGAAGGGCACTTGTGGAAGATGTTATACCAATTCTCATGGTTGCTTTCCATTGTCAACTGAGTCAACTTGTCACTCAATGTGTTGACAGGGTAGCACGATCAGACCTTGACTGGATCTCTATTCAGAAAGAGCTTCCCTTTGAGCTATCGGAAAATGTTAAATTGCTCCGCAACCCTAAGAAAGATGTTGAAAATGATGATCCTCCAGTAGTGGACACTATATGTCTAAAACGAATCATTAGAATACACAAGGCATTAGACTCAGATGATGTCGAGCTTGTTAAACTTCTTTTGAATGAGTCAGACATTACTTTAGATGGAGCCAATGCTCTCCATTATGCTGCAGCCTACTGTGATCCGAAGGTTGTTTCTGAGGTACTTAGTTTGGGTCTGGCTGATGTCAATCTTCGGAATTCTCGGGGATACACGGTTCTTCACATTGCTGCCATGCGTAAGGACCCTTCCATTATAGTATCACTTCTTTCAAAAGGGGCTTTTGCATCAGATTTGACATTTGATGGTCAGAGTGCTGTTAGTATTTGCAAGAGGTTGACAAGACCAAAGGATTATCATACAAAAACAGAACAGGGGAAAGAAACAAACAAAGATCGGATATGCATCGATGTCCTTGAAAGAGAAATGCGGAGGAATCCATTGGCTGGGGATGCCTCTATCTCTTCCCACACAATGGCCGATGATATCCACATGAAGCTACTATACCTCGAGAACAGGGTGGCATTTGCGAGACTATTGTTCCCTTCGGAAGCCAAACTAGCCATGGACATCGCACATGCTGAGACAACATCGGAGTTCGCTGGTATTTATGCACCTAAAGGCTCAAATGGAAACATCAGGGAGGTTGATCTCAATGAGACTCCGAAAATGCAAAACAAAAGACTTCTTTCCAGGATGGAAGCCCTAATGAAAACAGTGGAGATGGGACGACGCTATTTTCCTCATTGCTCGGAAGTGTTAGATAAGTTCATGGAAGATGACCTGCTTGATTTGTTTTACCTCGAGAAGGGAACCCGAGAAGAGCAAGGAGTGAAGAGGAAGCGTTTCATGGAGCTCAAAGATGATGTCTACAAGGCTTTCACAAAGGACAAGGCTGGGTTTAGCGGCACCGGCATTTCAACTTCATCATCCTCTTCATCCCTCAGAGATTCTGTACATTACAAAGCTAGGAAAGTGTGA 1758 0.4204 MAHSAEPSSSLSFTSSLSNGSVNHNMCTSYGPDPGLNLDVISLSKLSSNLEQLLVESDSDYSDADIVVEGIPVGVHRCILASRTKFFNELFKKEKNSSEKEGKLKYFMSDMLPYGKVGYEAFNIFLGYVYTGKLKPSPTEVSTCVDNACLHDSCRPAINFAVELMYASSIFQIPELVSLFQRRLLNFIGRALVEDVIPILMVAFHCQLSQLVTQCVDRVARSDLDWISIQKELPFELSENVKLLRNPKKDVENDDPPVVDTICLKRIIRIHKALDSDDVELVKLLLNESDITLDGANALHYAAAYCDPKVVSEVLSLGLADVNLRNSRGYTVLHIAAMRKDPSIIVSLLSKGAFASDLTFDGQSAVSICKRLTRPKDYHTKTEQGKETNKDRICIDVLEREMRRNPLAGDASISSHTMADDIHMKLLYLENRVAFARLLFPSEAKLAMDIAHAETTSEFAGIYAPKGSNGNIREVDLNETPKMQNKRLLSRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLLDLFYLEKGTREEQGVKRKRFMELKDDVYKAFTKDKAGFSGTGISTSSSSSSLRDSVHYKARKV 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1571 585 SMART ANK_2a 265 293 IPR002110 GO:0005515
Lal5g1571 585 SMART ANK_2a 328 360 IPR002110 GO:0005515
Lal5g1571 585 SMART ANK_2a 294 324 IPR002110 GO:0005515
Lal5g1571 585 MobiDBLite consensus disorder prediction 559 585 - -
Lal5g1571 585 CDD BTB_POZ_NPR_plant 45 188 - -
Lal5g1571 585 ProSiteProfiles BTB domain profile. 62 138 IPR000210 GO:0005515
Lal5g1571 585 Gene3D Potassium Channel Kv1.1; Chain A 38 220 IPR011333 -
Lal5g1571 585 ProSiteProfiles Ankyrin repeat region circular profile. 328 353 - -
Lal5g1571 585 PANTHER REGULATORY PROTEIN NPR3 8 573 - -
Lal5g1571 585 Pfam Ankyrin repeats (3 copies) 271 353 IPR002110 GO:0005515
Lal5g1571 585 Gene3D - 265 402 IPR036770 -
Lal5g1571 585 PANTHER REGULATORY PROTEIN NPR3 8 573 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lal5g1571 585 MobiDBLite consensus disorder prediction 560 576 - -
Lal5g1571 585 Pfam NPR1/NIM1 like defence protein C terminal 370 572 IPR021094 -
Lal5g1571 585 SMART BTB_4 62 188 IPR000210 GO:0005515
Lal5g1571 585 Pfam BTB/POZ domain 59 178 IPR000210 GO:0005515
Lal5g1571 585 SUPERFAMILY POZ domain 50 187 IPR011333 -
Lal5g1571 585 SUPERFAMILY Ankyrin repeat 268 371 IPR036770 -
Lal5g1571 585 ProSiteProfiles Ankyrin repeat profile. 328 353 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1571 Lal-Chr5 18252498 18256673 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal5g1571 NPR1_like_C 1.9e-93 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1571 K14508 - gmx:100217338 939.873