Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1564 ATGGAAGAGGAGGCCTCAATTCATTGTGAACAATTGCTAGATGATGAATGCATTGAGGTTCAGAAAGAAGAAGGTGCCACACTCGTTGAATTAGATTGTCAAAATGGTTTTTCTGAAGGAAGAAGGGAATTTGTTGCACCTGCTATTGGAATGGAGTTCGAGTTGTATGATGATGCTTATAATTACTATATCTGCTATGCCGAGGAGGTGGGATTTTGTGTTCGGGTGAAAAATTCATGGTTCAAGCGAAATAGTAGAGAAAAATATGGCGCGGTTCTTTGTTGTAGCAGCCAGGGTTTCAAAAGAATAAAAGATGTTAACCATTTGAGAAAAGAAACAAGAACTGGTTGTCCTGCAATGATGAGGATGAGGTTAATGGATTCTTGGAGATGGAGGATACTTGAGGTTACACTTGAACATAACCACATCTTAGGTGCGAAGATGTTCAAATCCGTTAACAAGATGGGAACTGGAACCAAAAGGAAGCCATTGCTTAGTTCTGATGCTGAAGTAAAAACAATCAATTTATACCGTGCACTTGTGATAGATGCAGGAGGTGACACACTAGCCATTTATAATTTCCTCTGCCGTATGCAATTGACTAATCCAAACTTCTTTTACTTGATGGATTTCAATGAGGAAGGGCATTTGAGGAACGCATTCTGGGTTGATGCTATGTCAAGGGTTGCGTGTGGTTATTTTGGCGATAAAGTACCAGAAAAGTTGGGAGGATTGCGCAATTATGATGCAATCAGAAAAGGACTTAGTAAAGCAGTGTATGTATACAAACAAACTCCTTTGAAGGAGTTTCTTGATAAGTATGAATTAGCACTCCACAAGAAGCACAAGGAAGAATATATTGCAGATATTGAATCAAGAAGTTCAAGCCCCTCGCTGAAGACCAGATGCTCTTTCGAATTGCAGCTGTCTAGTATGTACACTAGAGAAATATTCATCAAGTTCCAACACGAAGTGGAAGAAATATATTCTTGTTTTGGTACAACACAATTACATGCGGATGGTCCAGTTATAATTTTCTTGGTCAAGGAGCGCATTTTGGGTGAGGGAACTAGGCGGGAGATTAGGGATTTTGAAGTTCTGTACAGTAGGACAGCAGGTGAAGTTCGTTGCATCTGTAGATGCTTTAACTTTTACGGGTATTTATGTCGCCATTCGCTGTGTGTGCTCAATTTTAATGGGGTGGAAGAGATACCTCCCAATTACATTCTTTCAAGATGGAAGAAAGATTACAAGCGCCTTTATGTTCCCGATCACAGCCCTGGTGGTGCTGATGGTACTGACCGTATTCAATGGTGTAATCAGTTATCTAGGAGTGCCTTGCAAGTTGTGGAGGAGGGGATAATTTCTCTGGACCATTACAATGTAGTCTTACAGGCTTTTCAAGAATCACTAAGTAAGGTTCATGATGTAGAACTGAAGCAAAAGTAA 1449 0.4017 MEEEASIHCEQLLDDECIEVQKEEGATLVELDCQNGFSEGRREFVAPAIGMEFELYDDAYNYYICYAEEVGFCVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMMRMRLMDSWRWRILEVTLEHNHILGAKMFKSVNKMGTGTKRKPLLSSDAEVKTINLYRALVIDAGGDTLAIYNFLCRMQLTNPNFFYLMDFNEEGHLRNAFWVDAMSRVACGYFGDKVPEKLGGLRNYDAIRKGLSKAVYVYKQTPLKEFLDKYELALHKKHKEEYIADIESRSSSPSLKTRCSFELQLSSMYTREIFIKFQHEVEEIYSCFGTTQLHADGPVIIFLVKERILGEGTRREIRDFEVLYSRTAGEVRCICRCFNFYGYLCRHSLCVLNFNGVEEIPPNYILSRWKKDYKRLYVPDHSPGGADGTDRIQWCNQLSRSALQVVEEGIISLDHYNVVLQAFQESLSKVHDVELKQK 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1564 482 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 260 479 IPR031052 GO:0006355
Lal5g1564 482 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 181 237 IPR031052 GO:0006355
Lal5g1564 482 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 237 260 IPR031052 GO:0006355
Lal5g1564 482 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 20 175 IPR031052 GO:0006355
Lal5g1564 482 ProSiteProfiles Zinc finger SWIM-type profile. 364 400 IPR007527 GO:0008270
Lal5g1564 482 SMART 26again6 375 402 IPR006564 GO:0008270
Lal5g1564 482 Pfam FAR1 DNA-binding domain 61 144 IPR004330 -
Lal5g1564 482 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 20 175 - -
Lal5g1564 482 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 237 260 - -
Lal5g1564 482 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 181 237 - -
Lal5g1564 482 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 260 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1564 Lal-Chr5 18202756 18205110 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal5g1564 FAR1 1e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1564 - K17604 gmx:100796448 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1564 5 18202756 18205110 Lal11g0336 11 2473999 2476791 LSH