Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1554 ATGTATCATCCAAAGAACTTTCCTAGTCAAAGTCTAATTGGAAGCAATTCATTAGTTCATGATCAGCTAATAGATTGTGGTGGCAGCACTATGGATGCTGGCAATGGTGGAAACAACACCAACAACCCTAATGTCTCCTCAAAGCAACGTTTACGTTGGACACATGAGCTACATGAACGCTTTGTGGATGCTGTGGCACAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGGGTCCTCAGAGTTATGGGTGTGCAAGGCTTAACTATTTATCACGTCAAAAGCCATTTACAGAAATATCGACTAGCAAAGTACCTACCTGATTCCTCATCCGATGAAGGGAAAAATGCTGACATGAAAGAAACAGGGGATATGCTATCCAACCTTGATGGTTCATCTGGCATGCAGATCACTGAAGCACTAAAGCTGCAAATGGAGGTGCAGAAGCGACTACATGAACAATTGGAGGTGCAGAAACAGCTACAACTACGGATCGAAGCTCAGGGTAAATACTTGAAAAAGATAATTGAAGAGCAACAGCGACTCAGTGGGGTTCTTTCAGATGCACCTGGCTCTGGGGTTACAGCTTCAGCTCAAGGTGGCATGTACCAAGAACATGATAACAAGACTGACCCGGCAACTCCTGACCCAGAAAAGGCTGCCAAAGAGCGTGCCCCGGCAAAGAGTCTCTCAATTGAATCTTTTTCATCTCACCATGAACCATTGACTCCTGATTCTGGCTGTGATGTTGGTTCCCCTGCTGAGAGCCTTAAAGGCGAGAGATCAACCAAGAAGCAAAGGGTAAGCATGGAGGAAGCAGTATATTCTAAACCGGAAATGGTGTTTCCACATCAGATAATGGAGTCAAGCATGTCATCATACCAGCAGGCAAACACTGTTTTCCTTTGCCAAGAGCAATTTGACCCTTCATTGAGGGGTATATCTGGCAGAAGCAATGGGGAGTTGGAGAAGTAA 975 0.4554 MYHPKNFPSQSLIGSNSLVHDQLIDCGGSTMDAGNGGNNTNNPNVSSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKNADMKETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQKQLQLRIEAQGKYLKKIIEEQQRLSGVLSDAPGSGVTASAQGGMYQEHDNKTDPATPDPEKAAKERAPAKSLSIESFSSHHEPLTPDSGCDVGSPAESLKGERSTKKQRVSMEEAVYSKPEMVFPHQIMESSMSSYQQANTVFLCQEQFDPSLRGISGRSNGELEK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1554 324 MobiDBLite consensus disorder prediction 184 271 - -
Lal5g1554 324 Pfam MYB-CC type transfactor, LHEQLE motif 135 181 IPR025756 -
Lal5g1554 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 312 IPR044848 GO:0003700
Lal5g1554 324 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Lal5g1554 324 MobiDBLite consensus disorder prediction 107 130 - -
Lal5g1554 324 MobiDBLite consensus disorder prediction 190 204 - -
Lal5g1554 324 Coils Coil 138 158 - -
Lal5g1554 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 312 - -
Lal5g1554 324 Gene3D - 47 106 - -
Lal5g1554 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 105 IPR017930 -
Lal5g1554 324 MobiDBLite consensus disorder prediction 209 226 - -
Lal5g1554 324 Pfam Myb-like DNA-binding domain 51 101 IPR001005 -
Lal5g1554 324 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1554 Lal-Chr5 18129108 18136757 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1554 83 301 G2-like Transcription Factor Family AT2G01060 64.912 8.33e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal5g1554 Myb_DNA-binding 2.1e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1554 5 18129108 18136757 Lal11g0346 11 2529883 2535241 LSH