Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1553 ATGTTTCCAAGGTTGATACACCCCATTGAGGGGCTCGTTGAAGATGTTCAAGGTGGTGGTTCCAACCTCTCTCACAATCACAAGGGAGACCCATGTCTTGTTCTCACTGCTGATCCAAAACCTCGACTTCGTTGGACCCAGGACCTTCATGAACGGTTCATTGATGCTGTTACTCAACTTGGAGGTGCTAGCAAAGCTACACCAAAGGCAATCATGCGAACTATGAATGTCAAGGGTCTGACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGACTTGGTAAGCAATCAGGGAAAGATATCGGTGAGGCATGCAAAGATGGAATGTCAGGTTCATATCTTTTAGAAAGCCCTACTGATAACTCTTCTCTGAAGTTGGCAACTTCCGATACAAACGAGGGGTATGAAATCAAGGAGGCATTAAGAGCACAGATGGAAGTGCAAAGTAAACTACATTTACAAGTTGAGGCAGAGAAGCATGTGCAGATTCGCCAGGATGCAGAGCGTAGATACATGGCCATGCTTGAAAGAGCTTGCAAAATGCTGGCTGATCAATTTATAGGTGCTACTGTTATAGACACTGATAGCCAAAAGTTTCAAGGAATTGGAAGTATAGCACCAAGAGGTCCCATGGTTGATGCTCTTGGTTTTTACTCCATGCTATCTTCTGAGGTGGCCAGAGTGCACCTCCCGGAAGAAGAAATACCAGCGAGTCTCCAACCACAACCCCAACGGGGTGATTGTTCGACTGAAAGTAGTCTAACTTCACACGAGACTTTCGAAGGAATAGGTTTACAAGGAACTCCAGGTGGCGAAAAAAGAAGGATGTTGGGCATGGAGTCTATGGCAACACCTGTGATATGGAATGAAGCTAAGATGAGAAGTCAAGGTAATCCTCATGGAATGACTAGGTATGGCATGTAG 927 0.4466 MFPRLIHPIEGLVEDVQGGGSNLSHNHKGDPCLVLTADPKPRLRWTQDLHERFIDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDIGEACKDGMSGSYLLESPTDNSSLKLATSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHVQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIGSIAPRGPMVDALGFYSMLSSEVARVHLPEEEIPASLQPQPQRGDCSTESSLTSHETFEGIGLQGTPGGEKRRMLGMESMATPVIWNEAKMRSQGNPHGMTRYGM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1553 308 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Lal5g1553 308 Pfam Myb-like DNA-binding domain 43 93 IPR001005 -
Lal5g1553 308 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 40 95 IPR006447 GO:0003677
Lal5g1553 308 SUPERFAMILY Homeodomain-like 40 96 IPR009057 -
Lal5g1553 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 97 IPR017930 -
Lal5g1553 308 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 308 - -
Lal5g1553 308 Gene3D - 39 97 - -
Lal5g1553 308 MobiDBLite consensus disorder prediction 243 263 - -
Lal5g1553 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 308 IPR044848 GO:0003700
Lal5g1553 308 MobiDBLite consensus disorder prediction 236 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1553 Lal-Chr5 18122729 18126295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1553 26 257 G2-like Transcription Factor Family AT3G24120 47.541 7.62e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal5g1553 Myb_DNA-binding 3.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1553 - - lang:109329801 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1553 5 18122729 18126295 Lal3g0207 3 1372186 1384256 LSH
Lal5g1553 5 18122729 18126295 Lal11g0347 11 2539950 2545134 LSH