Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1543 ATGAGGCCTCCTTCACTGCCGATTTCGAAGGCATGCAAACCTGAGCCATATGCTCGTGAAGATATGTCGAAGTCTGTGCAAAATTCATCAAGGCAGAATACTGTTGAAATTCTTGATATGAAGAAGTTAGGAATTTCAGCCCATAAGGAGTCTGCTCCTTCATCTGTCCTCGACAAAGAAGTAGATCAAGCTGTTAATGAGAACGTAGGCTCACAGGAAAGCTCTATTGATCATGACAAAAAGACATCGGGATATGGAAGCGTGAATAACAGTCCTGTTTCTGCTAAAGTTAGTGATGGGGCCTGCAGTATTGCAAAGACGAGTGGAAGTGCCAAGATCAGTGACCGTTCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTGCAGAGCAAGTACAAGCAGTGATGTGAGTGACGAGAGTACTTGTAGTAGCTTTAGTGGCAGCATAAACAAGCCTCACAAGGCCAACGACATCAGATGGGAAGCTATCCAAGTTGTTCGAACAAGAGATGGGGTATTGGGTTTAGGTCACTTTAGACTGCTGAAGAGGTTGGGATGTGGCGATATCGGCAGTGTATATCTCTCTGAGTTGAGTGGAACTAAATGTCACTTTGCGATGAAGGTGATGGACAAAGGGTCCCTAGCAAGTCGTAAAAAGCTACTTCGCGCTCAGACAGAGAGAGAAATTCTTCAGTCACTTGACCACCCCTTTCTCCCAACTTTGTATACCCATTTTGAGACAGAGAAATTCTCATGCTTGGTAATGGAGTTCTGCCCTGGTGGAGACCTCCATACACTTCGCCAGAAGCAGCCAGGGAAGCATTTTCCCGAGCAGGCAGTGAAGTTTTATGTGGCAGAGGTCCTACTAGCTTTGGAGTACCTCCACATGCTTGGAATTGTCTATCGTGACCTGAAGCCTGAAAATGTCCTTGTTAGGGATGATGGACATATTATGCTCTCCGACTTTGACCTTTCCCTCCGTTGTGCTGTTAGTCCAACCCTGGTAAAAAGCACAACCATGGATTCCGAGCCTTTCAGAAAGAATCCAACATATTGTGTCCAGCCTGCATGTATTGAGCCACCTTCCTGCATCCAGCCATCATGTGTTGCTCCTACCACATGCTTTTCACCGCGGTTCTTCTCTAGCAAATCAAAGAAGGAACGCAAGCCCAAAAATGAAATTGGCAACCAAGTGAGTCCGTTACCTGAGCTCGTCGCTGAGCCTACTGATGCTCGGTCTATGTCATTTGTTGGAACCCATGAATACTTGGCACCTGAGATCATTAAGGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACTTTTGGAATTTTTCTATATGAGTTGTTGTTTGGTAAGACTCCTTTTAAGGGTTCCGGGAACCGAGCAACATTGTTTAATGTTGTAGGTCAGCCGCTGCGATTTCCAGAAGGACCTGTTGTAAGTTTTGCAGCAAGGGATCTTATAAGAGGGTTGCTTGTAAAGGAACCTCAGCACAGATTGGCATATAAAAGAGGTGCTACTGAGATTAAGCAACATCCCTTTTTTGAAGGTGTGAATTGGGCATTGATCCGTTGTGCTACCCCACCCGAGATTCCGAAGCATGTTGAGTTTGAGAAGGTACCTTCACCAGCCTCATCAGCTGTTGAAAAAGCTGTTAATCATATGCCACTAGGTAATAATCAGAAAGGTCCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1725 0.451 MRPPSLPISKACKPEPYAREDMSKSVQNSSRQNTVEILDMKKLGISAHKESAPSSVLDKEVDQAVNENVGSQESSIDHDKKTSGYGSVNNSPVSAKVSDGACSIAKTSGSAKISDRSDFVESGKSSICRASTSSDVSDESTCSSFSGSINKPHKANDIRWEAIQVVRTRDGVLGLGHFRLLKRLGCGDIGSVYLSELSGTKCHFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSTTMDSEPFRKNPTYCVQPACIEPPSCIQPSCVAPTTCFSPRFFSSKSKKERKPKNEIGNQVSPLPELVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEGPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKHVEFEKVPSPASSAVEKAVNHMPLGNNQKGPDNYLEFDFF 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1543 574 CDD STKc_phototropin_like 177 534 - -
Lal5g1543 574 ProSiteProfiles Protein kinase domain profile. 178 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1543 574 SMART serkin_6 178 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1543 574 MobiDBLite consensus disorder prediction 67 90 - -
Lal5g1543 574 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 13 574 - -
Lal5g1543 574 MobiDBLite consensus disorder prediction 1 33 - -
Lal5g1543 574 Gene3D Transferase(Phosphotransferase) domain 1 264 533 - -
Lal5g1543 574 Gene3D Phosphorylase Kinase; domain 1 172 263 - -
Lal5g1543 574 Pfam Protein kinase domain 413 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1543 574 Pfam Protein kinase domain 179 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1543 574 SUPERFAMILY Protein kinase-like (PK-like) 155 539 IPR011009 -
Lal5g1543 574 PANTHER FLIPPASE KINASE 1-RELATED 13 574 - -
Lal5g1543 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1543 Lal-Chr5 18035527 18039692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1543 13 574 AGC Kinase Gene Family AT5G47750 77.208 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lal5g1543 Pkinase 7.1e-37 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1543 5 18035527 18039692 Lal5g1543 5 18035527 18039692 ECH
Lal5g1543 5 18035527 18039692 Lal3g0218 3 1450767 1455263 LSH
Lal5g1543 5 18035527 18039692 Lal11g0357 11 2622453 2626735 LSH