Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1536 ATGGACATCTTCGCCGCCGGCCATGTTTCTCCATTCCCGAATTCCGGCGATCTCCTTTACGATCCTCTCTTTTCCACCACCGACATCCACTCCCACCGTCACAAGCTCCGCCCCATCCGCCCCCACGATGCTACTCCATGTGTCCTTAATGCTGATTCAACTCATAACCTTGACCAGCTTCATCTTCAACCCCAATATCCTCTGCTTCATGGATCCGGGTCGGGTCTCCACCATGGCTCATCTTTGGATGATGATGATGACGACGGCAATTCTTCGAGAAGTACTACAGAACCTCGGTCTAGAAAGAGAAGCAAAAAGACGGCGAGAAAGCTTGAAAGCTTTGTACAAAACTTGGTAATGAAAGTGATGGAAAAGCAAGAGCAGATGCATAAGCAGTTAGTGAACATGATAGAACAGAAAGAAAGGGAAAGAATGATGAGAGAAGAAGCATGGAACCGTGAGGAGATGGAAAGAATAAAAAAAGATGAAGAAGCTAGAGCACAAGAAAAGTCTCGTAATCTAGCCATCATATGCTTCATTCAGAATCTATTAGGCCATGAAATTCAAATCCCCCAAACAGAAGAAGTAAGCAGCAAAAAAGAAGAGCACGAAGGTGACACAGACATCCGAACAGATTTCATCACGGATCCAAATAACAACAGATGGCCAGATGTTGCGGTACAAGCGCTCATAACCGTAAGAACTTCCTTGGAACACAAGTTTCGTCTTATGGGAACGAAAGGATCAATATGGGAGGAGATATCTGAAGCAATGCATAAAAGGGGCTACAACCAATCTGCAAAGAAGTGTAAGGAGAAATGGGAAAACATCAACAAGTACTATAAAAGGACAGTGGGAAGTGGCAAGAGGAGGCGTCAGGATACTAAAACTTGCCCATACTTTGATGAATTGGACATTCTGTATAGAAATGGCATCCTCAGTCATGGAAATACCTTGAGCAATACCAACAATGTTCCCAAGATTGAAAAAGAGGAAAGTAAAACTCAATAA 1011 0.4362 MDIFAAGHVSPFPNSGDLLYDPLFSTTDIHSHRHKLRPIRPHDATPCVLNADSTHNLDQLHLQPQYPLLHGSGSGLHHGSSLDDDDDDGNSSRSTTEPRSRKRSKKTARKLESFVQNLVMKVMEKQEQMHKQLVNMIEQKERERMMREEAWNREEMERIKKDEEARAQEKSRNLAIICFIQNLLGHEIQIPQTEEVSSKKEEHEGDTDIRTDFITDPNNNRWPDVAVQALITVRTSLEHKFRLMGTKGSIWEEISEAMHKRGYNQSAKKCKEKWENINKYYKRTVGSGKRRRQDTKTCPYFDELDILYRNGILSHGNTLSNTNNVPKIEKEESKTQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1536 336 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 78 334 - -
Lal5g1536 336 Gene3D - 222 283 - -
Lal5g1536 336 MobiDBLite consensus disorder prediction 193 215 - -
Lal5g1536 336 MobiDBLite consensus disorder prediction 79 98 - -
Lal5g1536 336 CDD GT1 220 284 - -
Lal5g1536 336 Pfam Myb/SANT-like DNA-binding domain 220 305 IPR044822 -
Lal5g1536 336 MobiDBLite consensus disorder prediction 193 211 - -
Lal5g1536 336 Coils Coil 153 173 - -
Lal5g1536 336 PANTHER - 78 334 - -
Lal5g1536 336 MobiDBLite consensus disorder prediction 65 109 - -
Lal5g1536 336 Coils Coil 123 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1536 Lal-Chr5 17983064 17985441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1536 102 309 Trihelix Transcription Factor Family AT5G47660 42.152 8.86e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lal5g1536 Myb_DNA-bind_4 1.4e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1536 5 17983064 17985441 Lal11g0364 11 2692232 2694263 LSH