Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1535 ATGGGGAATGTGAATGATAGAGAACAAGTTTTCAATGTTACTGCTGCTTCACAGGTTCAACAAAACCAAGAAAGTGAAGAAGAATGTGAAATTGTTGCACCTTCTGAGTTCTTGATGATGATGGGTCAGGTTCCTTCACCTAGCCCTAGACCTACCCATTCTCCATTCATGTTCACCCCTCAAGTACCAGTGGTTCCACTACAAAGACCTGATGAGATGCATGTTTCAAGTTCTTCCTGGATGCAAACTAGTTCAGGGTATGAAGATATGTACTGTGAACTAGGAATTCCAACAATGATTACTTGGAGTTATGAAGGGAAAGAGGTAGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGGATTACCTTGCAGAGATCAGGGAAGGACTTCACTATAATGAAGGTACTGCCATCTGGTGTTTACCAGTTCAGGTTTATCGTCGATGGACAGTGGAGGTATGCACCTGACTTGCCTTGGGCCATAGATGAGGCTGGGAATGCTTACAACACTCTGGACTTACAGGATTTTGTTCCTGAAGATATTGGAAGCATTTCTAGCTTTGAACCTCCTAAATCACCCGAGTCTAGTTATAACAACTTACAACTTAGTTCTGAAGATTATGCAAAGGATCCACCATTGGTTCCTCCATACTTGCAAATGACACTTCTTAATGTCCCTTCAACAAATATGGAAATCCAGCCTCCTATATCAAAACCTCAGCATGTAATGCTCAATCATCTCTACATGCAGAAAGAAAAGGGTAGCCCTTCAGTGGTTGCTCTTGGTACAACTCATCGGTTCTTAGCCAAATATGTCACTGTGGTGCTGTACAAGTCTTTGCAGAGGTAA 852 0.4225 MGNVNDREQVFNVTAASQVQQNQESEEECEIVAPSEFLMMMGQVPSPSPRPTHSPFMFTPQVPVVPLQRPDEMHVSSSSWMQTSSGYEDMYCELGIPTMITWSYEGKEVAVEGSWDNWKTRITLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAIDEAGNAYNTLDLQDFVPEDIGSISSFEPPKSPESSYNNLQLSSEDYAKDPPLVPPYLQMTLLNVPSTNMEIQPPISKPQHVMLNHLYMQKEKGSPSVVALGTTHRFLAKYVTVVLYKSLQR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1535 283 CDD E_set_AMPKbeta_like_N 97 173 - -
Lal5g1535 283 SUPERFAMILY E set domains 96 175 IPR014756 -
Lal5g1535 283 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 283 IPR043554 -
Lal5g1535 283 SMART AMPKBI_2 191 281 IPR006828 GO:0005515
Lal5g1535 283 Gene3D - 184 281 - -
Lal5g1535 283 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 283 - -
Lal5g1535 283 Pfam Glycogen recognition site of AMP-activated protein kinase 96 175 IPR032640 -
Lal5g1535 283 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 209 279 IPR006828 GO:0005515
Lal5g1535 283 Gene3D Immunoglobulins 92 178 IPR013783 -
Lal5g1535 283 SUPERFAMILY AMPKBI-like 178 280 IPR037256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1535 Lal-Chr5 17979203 17982205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1535 53 176 Protein tyrosine phosphatase (PTP) family AT3G01510 26.316 6.90e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1535 K07199 - gmx:100777497 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1535 5 17979203 17982205 Lal3g0226 3 1508313 1511708 LSH
Lal19g1543 19 17652411 17654886 Lal5g1535 5 17979203 17982205 PCT