Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1529 ATGAGTTCAATACCTTCAAAAAACTTATGGATTCGGAGACAACAATGCCCTTGTGGAGATTGGAAGTGTTATATTACATATGAGGGTGATGATGATGAGGGTTCATCAACACCAGAGTTGATTAAGACAGAAAAACCATCATCTGGAACTATGATTACTCCTTATGTTGGAATGGTGTTTAAGAGTGATGATGATGCTTTCGAGTATTATGGCAGTTTCGCTAGGAAGAATGGATTCTCGGTTAGGAAAGAGAGATCTAGAATTAGCCCTCAGCTAGGCGTTTACAAACGTGACTTTGTTTGTTACCGTTCCGGATTCGCCCCGATGAAGAAGAAGTCTAATGGAGAAAACCATAGAGATAGGAAATCAGTGAGGTGTGGATGTGATGCAAAGATGTATCTGTCTAAGGAGGTAGTAGATGGGGTTCCCCAATGGTTCGTTGTGCAGTTTAGTAATGTACACAATCATGAGCTTTTGGAAGATGACCAAGTGCGTCTTCTTCCTGCTTATCGAAAGATTCACGAGGCTGATCAAGAGCGTATACTCTTGCTTTCTAAAGCTGGGTTTCCAATACATCGGATAGTGAAAATGCTTGAACTGGAAAAGGGGATTCAGGGTGGGCAACTGCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTTCAAAACCGTAAGAAGGTTGTTCAAGAGAACGGGGCATTGCTCAGTGAGAAAAGAGAAAATGACGTATTGGAACTTCTTGAGGCGTGCAAAGCTATGAAAGAAGCAGATGGTGACTTTGTTTATGATTTTACAGTGGATGAGAATGATAAGGTTGAAAATGTAGCTTGGTCATATGGTGACTCTGTAAATGCAAATGCTATGTTTGGCAATGTAGTTTATTTTGACACTACTTATAGATCAATCACTTATGGATTGCTTTTTGGAGCATGGTTTGGTATTGATAGCTATGGTAGAACCATTTTTTTCGGTTGTTGTTTATTGCAGGACGAAACACCCCAATCTTTCTCATGGGCATTACAGACATTTGTCCGACTCGTGAGTGGAAGATGTCCACAAACAATTCTGACTGATCTAGATCCCAGGCTTGGAGATGCCATCAAAAGCAAATTTCCAGGCACAAAACATGTCATTCCTCTATGGAACATAATGTACAAGGTACCCACTTGGTTTTCTCTTCTTCTTGGGTCTCGCTATGAAGAATTTAAATTCGAGTTCGATGTCTTATTCCACATTGAGAATACAGAGGAGTTTGAACTTCGGTGGAGCCAAATGATTTCTGTGTTTGGACTTGGTTCAGATAAACATATCGATTTACTGTATTCTGTTCGAGCATCCTGGGCACAATCCTACGTAAGAGGTTACTTTCTGGCTCGAATGGCGACAATACCTTACTCAAAATCTATAGATGCATTTCTGAAAGGGATCTTCACTTCATATTCATGCTTGCGTGGTTTTTTTGATCAGGTTAGCATTTCTGCAAATTTTCAACATCAAGCACGTCACGAGATTCAATATATACATCTGAAAACTTGCTTGCCGATTGAAGAGCAAGCACGGAGCATTCTCACGCCTTTTGCTTTTAATGTCTTGCAGCAGGAACTATCACTTGCGATGCAATATGCTACAACTGAAATGGCCAATGGATCATATATTGTGCGGCACTTCAAAAGGATGGATGAAGAACGGCTCGTAATATGGTTGGCTGAAGACGAACAGATACACTGTTCGTGCAAGGAATTTGAATCTTCTGGAATATTATGCAGACATGCTCTTCGCGTATTTGTTGTAAAGAATTACTTTCAGCTGCCTGACAAGTACTATTTGACTAGATGGAGACAAGAATGTTCTTCACTTATCGATGTTGATCACAATAATCAAAGTATTGGCGGGGAATGGTTCCAAGAATATCAGTCCATGGCTGAAACCTTGTTTTCAGAATCATCGATTACAAAAGAGCGATCCGACTACCTTCGTAGAGAACTGACAAAGGAACTTACTAGGATTCTTAATGAGGTTAGAAATCTGCCGGAGACTGATGGAGACTGCATGAACATGACAGTTTTGCCAACCAGTTAA 2076 0.4051 MSSIPSKNLWIRRQQCPCGDWKCYITYEGDDDEGSSTPELIKTEKPSSGTMITPYVGMVFKSDDDAFEYYGSFARKNGFSVRKERSRISPQLGVYKRDFVCYRSGFAPMKKKSNGENHRDRKSVRCGCDAKMYLSKEVVDGVPQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGQLPFLERDVRNFVQNRKKVVQENGALLSEKRENDVLELLEACKAMKEADGDFVYDFTVDENDKVENVAWSYGDSVNANAMFGNVVYFDTTYRSITYGLLFGAWFGIDSYGRTIFFGCCLLQDETPQSFSWALQTFVRLVSGRCPQTILTDLDPRLGDAIKSKFPGTKHVIPLWNIMYKVPTWFSLLLGSRYEEFKFEFDVLFHIENTEEFELRWSQMISVFGLGSDKHIDLLYSVRASWAQSYVRGYFLARMATIPYSKSIDAFLKGIFTSYSCLRGFFDQVSISANFQHQARHEIQYIHLKTCLPIEEQARSILTPFAFNVLQQELSLAMQYATTEMANGSYIVRHFKRMDEERLVIWLAEDEQIHCSCKEFESSGILCRHALRVFVVKNYFQLPDKYYLTRWRQECSSLIDVDHNNQSIGGEWFQEYQSMAETLFSESSITKERSDYLRRELTKELTRILNEVRNLPETDGDCMNMTVLPTS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1529 691 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Lal5g1529 691 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Lal5g1529 691 Pfam SWIM zinc finger 570 596 IPR007527 GO:0008270
Lal5g1529 691 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 28 681 IPR031052 GO:0006355
Lal5g1529 691 SMART 26again6 573 600 IPR006564 GO:0008270
Lal5g1529 691 PANTHER FAR1-RELATED SEQUENCE 10 ISOFORM 1 28 681 - -
Lal5g1529 691 Pfam MULE transposase domain 291 383 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1529 Lal-Chr5 17942262 17945355 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal5g1529 MULE 2.4e-16 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1529 - - aprc:113874854 1237.25