Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1525 ATGGAAATGGACCCTGGCAAACTTTTCATCGGAGGGATTTCCTGGGGCACAAATGAAGACCGACTTAGACAGTATTTCCATAATTTTGGAGATGTAGTGGAAGCTGTGATCATGAAGGATAGGACCACAGGGCGTGCCCGTGGTTTCGGGTTTATTGTTTTTGCTGATCCTTCTGTTGCCGAGCGAGTTGTTATGGAAAAGCATGTCATAGATGGAAGAGCTGTTGAAGCAAAAAAGGCTGTCCCTAGAGATGATCAGAATGTTATGAGCAGAAGCAACAGCAGCAGTCATGGGTCTCCTGGTCCTACTCCTACCTGCACAAAGAAGATATTTGTTGGAGGTCTAGCATCCACAGTCACCGAGAGTGAGTTTAAGAATTACTTTGAACAATTTGGAACAATTACAGATGTTGTCGTGATGTATGACCATAACACTCAAAGGCCAAGAGGTTTTGGATTCATCACCTTTGATTCCGAGCAAGGAGTTGAGAAGGTGCTCTACAAAACTTTTCATGAATTGCATGGTAAAATGGTTGAGGTTAAGAGGGCTGTTCCAAAGGAATTATCTCCAGTTCCAAGTAGAGCTCAGTTAGGTGGATATAACCATGGTCTAAGTAGAGTTAGTAGCTTTGCTAATGGTTTTGTTCAGGGATATAATCCAAGTCTTGTTGGAGGGAATGGACTTAGAATAGACGATAGATTGAGTCCTGTTGCCGTTGGTCGCAGTGGATATTCTGTTATGAGTCCTAGTTATGGATCAGGACTCAACTTTGAGCCACCATTGAGCCAAGTTCTCCTAGGACGGGCCTTGAACCCTTCATATAGTGGAAGTCCTAGCAGGTACGGTAATGCAATGGGGCATACAGGCAACAATTCAACCATAAGTTCAGCAAATCAGAATTTGTGGGGGAACGGGAATCTTAACTATGCTACTAACCTTAGAAGCTCTGATTCTTTTGCTGACTATGGAAGCGGAAATCCGAACATGGGTTCTTTTGGTCATATCGGACCACTTTGGAGTTCCTCCCTCGGTACTGATCAAGCTGGAGCCATTGGCTCCAGATATGGTAATAGCAGTCTTAGTTATAGCTCCGGAGATGTGATTTTCGGGTCAAAATCAGTAGGCTACGGAAAAAGTAGGGAAAATGTTGCTGCACCAGCTTCATCATATGCTGCTCTATCAAACGGAAGTTATGATGATGGGTACAACTACAAAGATACTTATGAAGCTGGGTCATTCTATGGGGACTATACTTGGGGATCATCATCTTCAGAACTAGCGCATGCTGGCACTCTTGGTTTTGACCTTGGAAATGCTGTTTCAGATTTAATGAGCAAAGGCTCCGGTGGCCACATTGAGGCTTATGCTGTTGCCAATACACACCCAGATAGAGGAAAGTTATGCCACGGATTCTCTGATGTATGTCGCAGAAGGAAAAAGATTGTGGAGAGCATAATTTTTCTTGTTTCATTGTGGTTTATTAGTGCATCAAGAATTTCATTAGACCTAGTTGGTTTGGCTGTGGAGCAAAAGGATGATCACTAA 1545 0.4337 MEMDPGKLFIGGISWGTNEDRLRQYFHNFGDVVEAVIMKDRTTGRARGFGFIVFADPSVAERVVMEKHVIDGRAVEAKKAVPRDDQNVMSRSNSSSHGSPGPTPTCTKKIFVGGLASTVTESEFKNYFEQFGTITDVVVMYDHNTQRPRGFGFITFDSEQGVEKVLYKTFHELHGKMVEVKRAVPKELSPVPSRAQLGGYNHGLSRVSSFANGFVQGYNPSLVGGNGLRIDDRLSPVAVGRSGYSVMSPSYGSGLNFEPPLSQVLLGRALNPSYSGSPSRYGNAMGHTGNNSTISSANQNLWGNGNLNYATNLRSSDSFADYGSGNPNMGSFGHIGPLWSSSLGTDQAGAIGSRYGNSSLSYSSGDVIFGSKSVGYGKSRENVAAPASSYAALSNGSYDDGYNYKDTYEAGSFYGDYTWGSSSSELAHAGTLGFDLGNAVSDLMSKGSGGHIEAYAVANTHPDRGKLCHGFSDVCRRRKKIVESIIFLVSLWFISASRISLDLVGLAVEQKDDH 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1525 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
Lal5g1525 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 167 IPR000504 GO:0003723
Lal5g1525 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lal5g1525 514 MobiDBLite consensus disorder prediction 86 103 - -
Lal5g1525 514 CDD RRM2_DAZAP1 107 185 IPR034131 GO:0003723
Lal5g1525 514 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Lal5g1525 514 MobiDBLite consensus disorder prediction 80 104 - -
Lal5g1525 514 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 466 - -
Lal5g1525 514 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lal5g1525 514 SMART rrm1_1 109 181 IPR000504 GO:0003723
Lal5g1525 514 SUPERFAMILY RNA-binding domain, RBD 102 204 IPR035979 GO:0003676
Lal5g1525 514 Gene3D - 5 88 IPR012677 -
Lal5g1525 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 185 IPR000504 GO:0003723
Lal5g1525 514 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 466 - -
Lal5g1525 514 Gene3D - 105 191 IPR012677 -
Lal5g1525 514 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1525 Lal-Chr5 17902481 17906259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1525 8 198 Eukaryotic Initiation Factors Gene Family AT2G36660 28.643 2.84e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1525 K14411 - cit:102621909 573.163