Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1523 ATGGTTTCTTTAGAAGAGTCTCGGTCCAATTCGACCCGGTTTTCATTGAACCGGAGCTATCAGTTCCATTCTTCCAAAACGCACCGTCACATAGGGAGGTCGATGCGAACAATACGATCCAATTTCTTCCAAGATGATAACGGTAGCAACAGTTGCACCTTCACTGATAAATCCACTTGTTTATCGGAAAATCTCTCTGACTCCGTCGTCGACTTCCGCCTCGGCGAACTAGCTTCCCGGAACAGCAAATCTGTCATGCCCTGTGTCGCCTCCGACGAGGAACTACTCGATTTCTCACACGCCTTCAGCGATTTCTCTGCCTACAGCAGCGATATCTCCGGTGAGCTACAGAAGCTAGCGTGCTTGCCGTCACCGGAATATGCTATTAAGAGTGACTCTGCCGGTGAAAAATCGGAACAGGAACCGGAGCCTGAGCCTTGCATGGGATTTCTGCAGAGGGAGAATTTCTCAACCGAGATTATAGAGAGTATTTTGCCGGAGGATCTTCAGCCGACGGTGAAGATGTGCATCGACGGTCTCCAGTCGCCGTCGGTTGCCGTGAAACGATCGGCTGCGGCGAAATTAAGACTATTAGCGAAGAACCGCGCCGATAACAGAATTCTGATCGCTGAGTGCGGTGCCGTTCCCGTTTTGGTTTCACTTCTCCGGTGCAGTGATCCGTGGACTCAAGAACACGCCGTAACGGCGTTGCTGAATCTGTCTCTTCACGAAGACAACAAGATGCTGATAACAAATGCCGGAGCAGTGAAATCTCTGATTTATGTTCTCAAAACAGGGACTGAAACTTCAAAGCAAAACGCTGCGTGTGCTTTACTAAGCCTCGCGTTAGTGGAAGAAAACAAGGCTTCGATCGGCGCTTCTGGCGCAATACCACCGCTGGTTTCGCTCTTAATGAACGGTTCAAACCGTGGAAAGAAGGACGCACTGACAACACTGTATAAACTATGCTCCGTGAAGCAGAACAAGGAGAGAGCGGTGAGGGCAGGAACAGTAAAGCTGCTGGTGGAGCTGGTGGCGGAGCAGGGGAGTGGTATGGCGGAGAAGGCAATGGTGGTACTGAACAGTATAGCGGGGATTGAGGAAGGGAAAGAGGCGATTGTAGAAGAAGGAGGGATTGCTGCACTTGTAGAAGTGATTGAAGATGGTTCTATGAAGGGAAAGGAGTTTGCTGTTTTAACACTTTTGCAGCTGTGTGGTGATAGTGTCAACAACAGAGGGTTGCTTGTGAGGGAAGGTGGAATTCCTCCTCTTGTTGCTCTTTCTCAAACTGGGACCGCTAGAGCTAAGAACAAGGCTGAACAACTCCTTCGATATTTGAGAGAATCAAGACAAGAAGCATCGACTTCAACTTCTTAG 1377 0.4938 MVSLEESRSNSTRFSLNRSYQFHSSKTHRHIGRSMRTIRSNFFQDDNGSNSCTFTDKSTCLSENLSDSVVDFRLGELASRNSKSVMPCVASDEELLDFSHAFSDFSAYSSDISGELQKLACLPSPEYAIKSDSAGEKSEQEPEPEPCMGFLQRENFSTEIIESILPEDLQPTVKMCIDGLQSPSVAVKRSAAAKLRLLAKNRADNRILIAECGAVPVLVSLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKASIGASGAIPPLVSLLMNGSNRGKKDALTTLYKLCSVKQNKERAVRAGTVKLLVELVAEQGSGMAEKAMVVLNSIAGIEEGKEAIVEEGGIAALVEVIEDGSMKGKEFAVLTLLQLCGDSVNNRGLLVREGGIPPLVALSQTGTARAKNKAEQLLRYLRESRQEASTSTS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1523 458 SUPERFAMILY ARM repeat 170 447 IPR016024 -
Lal5g1523 458 Gene3D - 162 314 IPR011989 -
Lal5g1523 458 Gene3D - 315 454 IPR011989 -
Lal5g1523 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 213 255 IPR000225 GO:0005515
Lal5g1523 458 Pfam Armadillo/beta-catenin-like repeat 286 324 IPR000225 GO:0005515
Lal5g1523 458 Pfam Armadillo/beta-catenin-like repeat 204 241 IPR000225 GO:0005515
Lal5g1523 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 295 337 IPR000225 GO:0005515
Lal5g1523 458 SMART arm_5 243 283 IPR000225 GO:0005515
Lal5g1523 458 SMART arm_5 366 406 IPR000225 GO:0005515
Lal5g1523 458 SMART arm_5 284 324 IPR000225 GO:0005515
Lal5g1523 458 SMART arm_5 408 448 IPR000225 GO:0005515
Lal5g1523 458 SMART arm_5 202 242 IPR000225 GO:0005515
Lal5g1523 458 Coils Coil 432 452 - -
Lal5g1523 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Lal5g1523 458 PANTHER U BOX DOMAIN-CONTAINING 6 455 - -
Lal5g1523 458 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1523 Lal-Chr5 17790875 17794087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1523 86 451 U-box Gene Family AT2G23140 42.781 2.07e-83 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1523 - - gmx:100806768 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1523 5 17790875 17794087 Lal11g0380 11 2791477 2797866 LSH