Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1517 ATGTCTGTAATCCAAACCACCACCGTTGATTGCGCTCATAACCGCAATCACTCATCGAAGCGAAAATTTGACGACTATGGTCCTATATTTGATGAAGACGATGATTATGCCGCCGATCTCCTTGTCAGGATGAAGAAAGATAAACCTGAAGCCGTGAATTCCTCCTCCGACGCCGCTGTTATGTCCACCACGGTTTCTGTTAGGGCTTCCGACGCGCGATCGGTGTCGTCACGCGCGTGCGCCGCTTTACACTCTCAGTCGACTCGGTACGAGTCAAGGTTACAGTTCTTCGTCAGAATGATTTCGAAAACAGTGGTGATGCACGCGTTTCCGCAAGACAGTGTGAAATCGATCCATGAGAGAATCGAATTGATGACCGGTATTCCGATTGTGGAGCAGCGTTTGATATACAGAGGGAAACAGCTTCGGTGGGAGCAGACTCTTTACGAATGCGCGATTGAAAACGACACGAATATTCAAATGGTTTGTCGTATGAAAAGCACGAGGCACCCGCAAGGTTGGAAACTTGTGGATGAAATGGTTTCAATAATTTGGCGTCTCTGCAGAAGAGAAACGGTTCACGATTCACTCAAAATCATTAAGGGTTTGATGACTAGTTATTTGAGTTTGGCTCAGTCGATAGTCGTAAACGAATACTTCTCTTCGTATTTCGACATTTTTTTATCTTCCAATGCTCCTATGGTTTTGGTTATGCTCTATTTTTCACCCTGTCCAGGTAACAAGGAACTTGCTGATTGGTCTATTAGGCATTTTTTGAGTTTGTGTAAAACTATCATGGATAAATCATTTCATGGTCAATGTGCTCGTTTGGTATTGGAATTGTGTAAGGTTCTTAAAACTGTAGGGCGTGATAATCCTTTGTATGTGTTAAGTCGAAGTACTTTCGCGTCATTGTTGGAGACTGCTACCGTTTCATACTGTTCTTTGGATGATGGGTGTGTATTGCTTCAAGATATTTTGCCCTTTGTTCGCGAGCTTGCGGATACGTTGATGAGGGATTTGGATTTGAGCATTGTACTCGACACCGGTGTGGGGCCGTTGATGAGTGATATGAGGGATTTTACTGCATTTTTGATCCCTATGAGGAGGGTAATCAAAGAGCTGCAGACTCTGAATGGGTCAAATGGAATCGAAGAGCTGCAGATTCCTAAGTTTTCTTTAAGTGATGATGGTAAACTCCATGAGGATCTATTGCATGCAGCAGAAGGGGCTGATAGCCTTCATCTTATATTTATTCATTTGTTGGGCAAAATGGTTGAGTGCCTTCGAAGCATGGAGGAATGCGTGGCTAACAAGGAACTAGAGGCAGGGGATTTTGTCTATTCGGCGTGGTCTCAGTATCTTTCCATCTTGAAGGAATTATATCTAATCAGTAAGCTCTATGATGGCGCAGAAGAATTTTTTTGGACAGTTCTTATGCAGGAAAGACGTATGGTGTCTCTACTAATTGTTAAATCTGCAAAGAGAACTGATGATCATCATTGGATTTTTGAGCACAAAGCTGTGACCAATTTTGAATCCAGGAGGCATTTGGCATTGCTGCTTTTCCCTGATGTAAAAGAAGACTATGAAGAGTTGCATGAGATGCTTATTGACAGGTCTCATTTATTTACTGAATCTTTTAACTACATAAAATATGCAGAGCCTGAATCTCTTCATGCTGGTCTCTTTATGGAGTTCAAAAATGAGGAAGCTACAGGACCAGGTGTACTGAGGGAGTGGTTTTTTTTGGTTTGTCAAGCAATATTTAATCCACAGAATGCCCTTTTTTTGGCATGCCCAAATGACAGGAGAAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACTTGCAGTACTTCGAGTTCTCTGGTCGTGTTATTGCATTAGCTTTGATGCACAGGGTGCACGTAGGTATTGTTTTTGCTCATGTGTTTTTTGTGCAATTGGCTGGAAAATCTATCACTTTAGAAGATATAAAGGATGCAGATCCTTGCTTGTATAGTAGCTGCAAACAAATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCATTAGGATTGACCTTTGTTAGAGAGGTGGAGGAATTAGGATACAGGAAAGTGATTGAGCTTTGCCCTGGCGGGGAAAGCCTTGTTGTGAATAGTAAGAACAGGAAGAAGTATGTTAATCTTCTTATACAGAATTGTTTTCGAACATCCATACATGACCAGGTATCATATTTTGCCAAGGGTTTTGCTGATATACTGTCCAACTCAACGCTCCAGCAGTTCTTCTTTCAAAGTTTAGAGCTCAAGGATCTTGATTGGATGCTTTATGGGAGTGATAAAACCATTTCTGTTGAGGATTGGAAGGCACATACAAAGTATAGTGACTATAAAGAGAGTGATCACCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCTGAACAAAGGAAAGTTCTCTTGTTCTTTTGGACATCAGTGAAACATTTACCAGTTGAGGGTTTTCGCGGTTTGGCTTCCCGTCTATACATTTATAAGTCCCTCGAACCTGATGATCACCTTCCTTCATCTCACACATGCTTTTACAGGCTGTGTTTCCCAGCATATTCATCTAAGGCTATCATGCAAGATCGTCTTGGAATCATCACTCAAGAACACATTGGTTGCAGTTTTGGTACCTGGTAA 2688 0.4178 MSVIQTTTVDCAHNRNHSSKRKFDDYGPIFDEDDDYAADLLVRMKKDKPEAVNSSSDAAVMSTTVSVRASDARSVSSRACAALHSQSTRYESRLQFFVRMISKTVVMHAFPQDSVKSIHERIELMTGIPIVEQRLIYRGKQLRWEQTLYECAIENDTNIQMVCRMKSTRHPQGWKLVDEMVSIIWRLCRRETVHDSLKIIKGLMTSYLSLAQSIVVNEYFSSYFDIFLSSNAPMVLVMLYFSPCPGNKELADWSIRHFLSLCKTIMDKSFHGQCARLVLELCKVLKTVGRDNPLYVLSRSTFASLLETATVSYCSLDDGCVLLQDILPFVRELADTLMRDLDLSIVLDTGVGPLMSDMRDFTAFLIPMRRVIKELQTLNGSNGIEELQIPKFSLSDDGKLHEDLLHAAEGADSLHLIFIHLLGKMVECLRSMEECVANKELEAGDFVYSAWSQYLSILKELYLISKLYDGAEEFFWTVLMQERRMVSLLIVKSAKRTDDHHWIFEHKAVTNFESRRHLALLLFPDVKEDYEELHEMLIDRSHLFTESFNYIKYAEPESLHAGLFMEFKNEEATGPGVLREWFFLVCQAIFNPQNALFLACPNDRRRFFPNPASKVHPLHLQYFEFSGRVIALALMHRVHVGIVFAHVFFVQLAGKSITLEDIKDADPCLYSSCKQILEMDADFIDSDALGLTFVREVEELGYRKVIELCPGGESLVVNSKNRKKYVNLLIQNCFRTSIHDQVSYFAKGFADILSNSTLQQFFFQSLELKDLDWMLYGSDKTISVEDWKAHTKYSDYKESDHQISWFWEIVGRMSAEQRKVLLFFWTSVKHLPVEGFRGLASRLYIYKSLEPDDHLPSSHTCFYRLCFPAYSSKAIMQDRLGIITQEHIGCSFGTW 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1517 895 CDD HECTc 534 893 IPR000569 GO:0004842
Lal5g1517 895 ProSiteProfiles HECT domain profile. 555 895 IPR000569 GO:0004842
Lal5g1517 895 Pfam Ubiquitin family 97 165 IPR000626 GO:0005515
Lal5g1517 895 PRINTS Ubiquitin signature 103 123 IPR019956 -
Lal5g1517 895 PRINTS Ubiquitin signature 124 144 IPR019956 -
Lal5g1517 895 PRINTS Ubiquitin signature 145 166 IPR019956 -
Lal5g1517 895 Gene3D Hect, E3 ligase catalytic domain 779 894 - -
Lal5g1517 895 Gene3D Hect, E3 ligase catalytic domain 655 737 - -
Lal5g1517 895 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 78 893 - -
Lal5g1517 895 Gene3D Hect, E3 ligase catalytic domains 537 768 - -
Lal5g1517 895 SUPERFAMILY Ubiquitin-like 90 171 IPR029071 -
Lal5g1517 895 ProSiteProfiles Ubiquitin domain profile. 94 168 IPR000626 GO:0005515
Lal5g1517 895 SMART ubq_7 94 164 IPR000626 GO:0005515
Lal5g1517 895 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 78 893 - -
Lal5g1517 895 Pfam HECT-domain (ubiquitin-transferase) 584 887 IPR000569 GO:0004842
Lal5g1517 895 SMART hect_3 553 893 IPR000569 GO:0004842
Lal5g1517 895 Gene3D - 86 176 - -
Lal5g1517 895 SUPERFAMILY Hect, E3 ligase catalytic domain 531 880 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1517 Lal-Chr5 17668055 17674959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1517 94 166 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.081 1.13e-07 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1517 5 17668055 17674959 Lal3g0240 3 1571223 1575891 LSH