Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1499 ATGAGTCGACTCGGTCGGAGGCAGAGGGAAACACCAACAACGATTCTCAGTTTATTAACGGATCAAATGGACGGCGTTGATGGAGGAACACGCAGGAGACGTAGTTTGAAGGAACGGCTAGGATTCATCGGAATGGGTTGTTGTGGGGCCACATGGGTTTTCCGTTCAACAACTCTAACGGCTACTAACGGTAGAGAGCAACAACCACAACAAGAAGAAGAACATAACCTGCAGGAGTTTCTAGAACTGGGTTCGGGTCAAGATCCGAACTTGTCTCAACCCGAATGTCTGGGTCCGATTGCGTCGAGTTCTTCGTCGGGAATGAACCTTGCGGCGGCGTTGGCGGCGGAGAGGGAGCTAAGGGGTCCGAATGAAGTGGAGAGGGTGTCGCTGATGAGGCTACTGGAAGAGACGGAGGAGGTGGTGGTGGTGGAGGAAGAGAAAGTAGTTTCAAATGCGGTGGGGAATGATTCAGTGTGTTGCGTGTGCATGGGAAGGAATAAAGGTGCAGCTTTCATTCCATGTGGACACACTTTTTGCAGAGTGTGCTCCAGAGAATTGTGGCTCAATCGAGGCTCTTGCCCCCTTTGCAATCGTTCTATTCTCGAGATTCTCGACATTTTTTAA 627 0.5056 MSRLGRRQRETPTTILSLLTDQMDGVDGGTRRRRSLKERLGFIGMGCCGATWVFRSTTLTATNGREQQPQQEEEHNLQEFLELGSGQDPNLSQPECLGPIASSSSSGMNLAAALAAERELRGPNEVERVSLMRLLEETEEVVVVEEEKVVSNAVGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1499 208 CDD RING-HC 160 197 - -
Lal5g1499 208 SUPERFAMILY RING/U-box 148 205 - -
Lal5g1499 208 SMART ring_2 160 197 IPR001841 -
Lal5g1499 208 Pfam Zinc finger, C3HC4 type (RING finger) 157 202 - -
Lal5g1499 208 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 208 - -
Lal5g1499 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 207 IPR013083 -
Lal5g1499 208 PANTHER OS01G0917900 PROTEIN 13 208 - -
Lal5g1499 208 ProSiteProfiles Zinc finger RING-type profile. 160 198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1499 Lal-Chr5 17529589 17530215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1499 15 208 C3H Transcription Factor Family AT4G22250 53.365 1.35e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1499 - - gmx:100804292 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1499 5 17529589 17530215 Lal3g0258 3 1681950 1682549 LSH