Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1472 ATGGACAAAGGGTGGGGTCTTACCCTTGATACTAGTTCCTCTACTTCCCTACCATTCTTTTCTTCTAAACCACCACCACCACCACCACCACCTCTTTCTATGAGTTTTTTCTCCAAAGATACTACTATGTTCCCCGCTTTGGGTTTCCCTGTTAACCTAAGTCGACCCACCAACAACGAAGAAGAAGAAGAAGAAGGTGATCAAAATCGCATGGTTGTTGGTGAAGTTGACTTTTTCTCTGATAGGAACAAGTCCTCATCTTCAGCTAGACATGATCGTAATCATCTTCTTCATCAACATGTTAAACCCATCATCAAGAAAGAGCTTCTTTGTGCTGATGAAAAACCATACAACTCTAATCTACAAGTTAATACTGGTTTACAACTCGTCACTGCTAACATTGGGAGCGATCAATCTACGGTGGATGATGGGGTTACATCAGAGGCTGAAGATAAGCGAGCTAAGAACACTGAGCTTGCACAGATGCAAATGGAGCTTCAACGAATGAATTCAGAAAATCAGAAGCTGAAGGAGATGCTTAGCCATGTGAACGGTAACTACACGGCTCTGCAAATGCATCTAGTGGCATTAATGCAACAACAACAACTACAGAAACCGCGTAGTGATAGCACAGAAAATGAGGTTGTTCAGAAAAAAGCTGAAGAGAAAAAACATGGTATTGGAGGAGAATTGGTGCAAAGGCAGTTCCTAGATTTAGGTCCAAGTGGTACAGTAGCTGAAGTAGATGATCATGTATCAAATTCTTCTTCTGATGAAAGAACACGATCTAGCACACCTCAGAACAATAAAATTGAAGCTGGAGTAACAAGAAATTACGTGAGAAATACTAATGGTAAAAACGAGTTGGCTAGAGAAGAGAGTCCAGGTTCAGAGTCACAAGGTTGGGGTCCCAATAAGCTTCAAAAATTGAACGCTCCCAATGTTATGGATCAATCCAATATAGAAGCCACAATGAGAAAAGCTCGTGTCTCGGTTCGTGCTAGATCAGAAGCTCCCATGATCAGTGATGGGTGCCAATGGAGAAAATATGGACAAAAAATGGCTAAGGGAAACCCATGTCCTAGAGCATATTACAGATGCACCATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGACAGAACCATTTTGGTAACAACTTATGAAGGTACACATAACCATCCTTTGCCACCTGCTGCTATGGCCATGGCATCAACAACTTCAGCTGCTGCTAGCATGCTACTATCAGGGTCAATGACCAGTGCAGATGGGATAATGAACCCAAATCTGCTATCAAGAGCTATTCTTCCTTGTTCTTCTAACATGGCAACACTTTCAGCTTCAGCACCATTCCCTACTGTGACATTAGACCTCACAAACAATGACCCAAACCCATTGGAACTCCAAAGACATCATCATAATCATAATCATTCTGCTCCATTATTCCAATTACCCTTCCCTGTAGGGCAGAATCCTCAGAACTTTGGGGTAGCCACCCCATTTGCACAAGCACTCTATAACCAATCCAAATTCTCTGGTCTTCAGTTTTCTCAGGATCATCAAGTTGGGTCTTCCCAAGTGCCCCCACTAGCTCCAAGGACAAATTTGCAGATACAGCCAAACCAACAGCAACCCTCCCTTGCTGACACAGTCAGCGCCGCCACCGCTGCCATCACCGCCGACCCTAACTTCACGGCTATGCTCGCGGCCGCCATCTCTTCCATCATCGGCGGTGCTCATGGAAACAACAACAACGGCGACAACAACAATCCCAATATCAACAACATGGCCAGTAAACTTAGCAGTTTTTCAGGAAACTAA 1836 0.4395 MDKGWGLTLDTSSSTSLPFFSSKPPPPPPPPLSMSFFSKDTTMFPALGFPVNLSRPTNNEEEEEEGDQNRMVVGEVDFFSDRNKSSSSARHDRNHLLHQHVKPIIKKELLCADEKPYNSNLQVNTGLQLVTANIGSDQSTVDDGVTSEAEDKRAKNTELAQMQMELQRMNSENQKLKEMLSHVNGNYTALQMHLVALMQQQQLQKPRSDSTENEVVQKKAEEKKHGIGGELVQRQFLDLGPSGTVAEVDDHVSNSSSDERTRSSTPQNNKIEAGVTRNYVRNTNGKNELAREESPGSESQGWGPNKLQKLNAPNVMDQSNIEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTSAAASMLLSGSMTSADGIMNPNLLSRAILPCSSNMATLSASAPFPTVTLDLTNNDPNPLELQRHHHNHNHSAPLFQLPFPVGQNPQNFGVATPFAQALYNQSKFSGLQFSQDHQVGSSQVPPLAPRTNLQIQPNQQQPSLADTVSAATAAITADPNFTAMLAAAISSIIGGAHGNNNNGDNNNPNINNMASKLSSFSGN 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1472 611 SMART WRKY_cls 341 401 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g1472 611 Coils Coil 152 186 - -
Lal5g1472 611 ProSiteProfiles WRKY domain profile. 336 402 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g1472 611 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 53 594 IPR044810 GO:0003700
Lal5g1472 611 MobiDBLite consensus disorder prediction 201 229 - -
Lal5g1472 611 Gene3D WRKY domain 326 403 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal5g1472 611 Pfam WRKY DNA -binding domain 343 400 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal5g1472 611 PANTHER WRKY TRANSCRIPTION FACTOR 6 53 594 - -
Lal5g1472 611 MobiDBLite consensus disorder prediction 1 33 - -
Lal5g1472 611 MobiDBLite consensus disorder prediction 588 611 - -
Lal5g1472 611 SUPERFAMILY WRKY DNA-binding domain 334 402 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal5g1472 611 MobiDBLite consensus disorder prediction 243 313 - -
Lal5g1472 611 MobiDBLite consensus disorder prediction 211 229 - -
Lal5g1472 611 MobiDBLite consensus disorder prediction 298 313 - -
Lal5g1472 611 MobiDBLite consensus disorder prediction 258 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1472 Lal-Chr5 17177574 17180501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1472 1 597 WRKY Transcription Factor Family AT1G62300 51.669 1.36e-161 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal5g1472 WRKY 7.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1472 - - ccaj:109803638 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1472 5 17177574 17180501 Lal5g1472 5 17177574 17180501 ECH
Lal6g0068 6 405122 408042 Lal5g1472 5 17177574 17180501 ECH
Lal1g0502 1 3222229 3227534 Lal5g1472 5 17177574 17180501 ECH
Lal5g1472 5 17177574 17180501 Lal11g0428 11 3203910 3207024 LSH