Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1470 ATGAATTGGATTAGAGGAAATTTACTTGGCCGGGGCTCGACCGCTTCGGTATATAGAGCTGAGTCTCGGCGACACGGTAAGGTATTTGCGGTTAAGTCCGCGGAATTCCAATATTCGGAATTCTTAAAGAAGGAGAAGGAGATTCTTTCGATACTTATTTGTCCTCAAATTGTTTCATACCAAGGTTTTGATGTTACATTCGAGAACGGTGCACATTACTACAACTTGTTCATGGAGTACGCGCCACTTGGCACGCTCTCTGACGCGGTTCGCAATAGGAAGGGAATAGAAGAAGCTGTGGTGAGATCCTACACGCGCCAAATCTTGGAAGGGTTGAACTACCTTCATGCAAATGGAATAGTGCATTGCGACGTGAAGGGACAGAACGTGTTGCTCACGGACCAAGGTGCGAAGATTGCTGACTTTGGTTGCGCTAAGAGGATAGGTGAATTGGCTGCACCAGTGGCGGGGACGCCGGCGTTTATGGCACCTGAGGTGGCGCGTGGGGAAGAACAAGGATTCCCTGCTGACGTGTGGGCTCTTGGGTGCACTGTTTTGGAGATGATCACTGGGAAGCCGCCGTGGCAAGGTGTTTCTGACCCGGCGGTGGTGGTTTATAGGGTTGGATTCTCCGGCGAGGTGCCGGAGATTCCAGGTTTTGTGTGTGATGAAGGGAAAGATTTTCTGAGCAAGTGTTTTAAAAATGACCCTTTTGAAAGGTGGACAGTGTTTGAGCTTCTTAATCATGAATTTGTTAGAGAAACAAATTTAGTGTATAATAGAATTCCATTTGCATGTGATTTGGAGACTCCAACAAGTGTGTTGGAAGGATGGTGCTTTTCGGACTCAAAGACCAATCCGGATGTGACACATGGCGGTTATTCTTGTTCCGGGGATTTTCCGAGTCCCCGGAACAGAATTCATATGTTGTGTACTTCTGAGTCCTTTTGGGATAGGGCTGATGATGGTGAAGAATTGGAATGGGTCACAGTGAGAAGCAATGCCATTGATGAGGAGGGGTTTGAGTTAGAGGGAATGTCATTGGGGTCTATTGAGAAAATGTCATGGAAAGTGCTTCACAAGCAGTGA 1089 0.472 MNWIRGNLLGRGSTASVYRAESRRHGKVFAVKSAEFQYSEFLKKEKEILSILICPQIVSYQGFDVTFENGAHYYNLFMEYAPLGTLSDAVRNRKGIEEAVVRSYTRQILEGLNYLHANGIVHCDVKGQNVLLTDQGAKIADFGCAKRIGELAAPVAGTPAFMAPEVARGEEQGFPADVWALGCTVLEMITGKPPWQGVSDPAVVVYRVGFSGEVPEIPGFVCDEGKDFLSKCFKNDPFERWTVFELLNHEFVRETNLVYNRIPFACDLETPTSVLEGWCFSDSKTNPDVTHGGYSCSGDFPSPRNRIHMLCTSESFWDRADDGEELEWVTVRSNAIDEEGFELEGMSLGSIEKMSWKVLHKQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1470 362 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1470 362 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 342 - -
Lal5g1470 362 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1470 362 Gene3D Transferase(Phosphotransferase) domain 1 2 272 - -
Lal5g1470 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Lal5g1470 362 Pfam Protein kinase domain 6 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1470 362 SUPERFAMILY Protein kinase-like (PK-like) 2 279 IPR011009 -
Lal5g1470 362 CDD STKc_MAPKKK 2 252 - -
Lal5g1470 362 PANTHER MAP KINASE KINASE KINASE 1 342 - -
Lal5g1470 362 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1470 Lal-Chr5 17162773 17164357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1470 1 252 MAP Kinase Kinase Kinase AT2G32510 54.826 3.43e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal5g1470 Pkinase 3.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1470 K20716 - gmx:100802174 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1470 5 17162773 17164357 Lal5g1470 5 17162773 17164357 ECH
Lal9g0367 9 2447080 2448318 Lal5g1470 5 17162773 17164357 ECH
Lal5g1470 5 17162773 17164357 Lal11g0430 11 3228729 3230330 LSH