Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1452 ATGGGTTGTCATGGTAGCAAAGAGACAAAAATCACTGAACAATTTTCTGGGCATGGATCAAATTCAAATCCAGCTAGCACTAGAAACCACCATCACACTGTTCAGCCTTCTACCACTCAAACTCAAACTCAAACTCAAACATCATCAGCAGCAACAGCAACACTACCCAATAACCAGAACCAGAAACAGCAACAAGTTCCAATAACAAAGCCTTATTCACAAAACACTAGGCCAGTGGTGCAGAAACAAGAGCCAACTATTCTAGGAAAACCCCTTGAAGATATCAAGAAGTACTATACCCTTGGCAAAGAATTGGGTAGAGGACAATTTGGGGTTACTTATTTATGCACTGAGAATTCAACTGGTTATACTTTTGCCTGCAAATCAATTTTGAAGAGGAAGCTTGTGTCTAAAGCTGATAAAGAGGATATAAAGAGGGAGATTCAGATTATGCAGCATTTGTCTGGCCAACCAAACATTGTGGAGTTCAAGGGTGCTTATGAGGACCGGTATTCAGTGCATCTTGTGATGGAGCTTTGTGCTGGTGGAGAGCTTTTTGATAGGATAATTGCTCAAGGGCACTATTCTGAACGAGCCGCGGCATCAATGTGTAGAGCTATTGTTAATGTTGTCCACATTTGTCACTTCATGGGTGTGTTGCACCGCGATCTAAAGCCTGAGAATTTCTTGCTTTCTAGCAAGGATGAGGATGCAACTCTCAAGGCAACTGATTTTGGACTATCTGTGTTTATTGAAGAAGGGAAGGTTTACCGTGATATGGTAGGCAGTGCTTACTATGTTCCTCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATGTTTGGAGTGCAGAAACTGAAAAGGGAATATTTAATGCTATATTAGAAGGTGAACTTGACTTTGAAAGCCAACCATGGCCATCAATATCAAACAGCGCTAAAGATCTAGTTAGGAAAATGTTGACACAGGACCCAAAGAAGCGGATTACTTCTGCTGAAGTCCTCGAACACCCATGGATACGAGAAGGTGGAGAGGCATCTGATAAACCTATTGATAGTGCAGTTCTATCTAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGATCGCAATGAAGGTTATGGCTGAAAATTTATCCGAAGAAGAGATTAAAGGTCTCAAAGCAATGTTTGCAAACATGGACACTGACAATAGTGGCACTATCACCTACGAAGAACTTAAGACAGGCTTGGCTCGAATTGGATCAAAATTGTCTGAGACTGAAGTGAAGCAACTCATGGAAGCTGCCGATGTTGATGGTAATGGATCAATTGACTATATTGAATTCATCTCAGCTACAATGCATAGGCACAGGCTTGAACGAGATGAACACCTTTACAAAGCATTCCAGTATTTCGATAAGGATAGCAGTGGATATATTACTAGAGATGAATTGGAAATTGCTATGACGAAGTACGGAATGGGTGATGAAGCTACCATAAAGGAAATAATTTCTGAGGTGGATACAGATAATGACGGACGAATAAATTACGAGGAATTCTGTGTAATGATGAGAAGTGGAATGCAACACGAGGGAAATCTACTAGAATGA 1599 0.4071 MGCHGSKETKITEQFSGHGSNSNPASTRNHHHTVQPSTTQTQTQTQTSSAATATLPNNQNQKQQQVPITKPYSQNTRPVVQKQEPTILGKPLEDIKKYYTLGKELGRGQFGVTYLCTENSTGYTFACKSILKRKLVSKADKEDIKREIQIMQHLSGQPNIVEFKGAYEDRYSVHLVMELCAGGELFDRIIAQGHYSERAAASMCRAIVNVVHICHFMGVLHRDLKPENFLLSSKDEDATLKATDFGLSVFIEEGKVYRDMVGSAYYVPPEVLRRSYGKEIDVWSAETEKGIFNAILEGELDFESQPWPSISNSAKDLVRKMLTQDPKKRITSAEVLEHPWIREGGEASDKPIDSAVLSRMKQFRAMNKLKKIAMKVMAENLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLARIGSKLSETEVKQLMEAADVDGNGSIDYIEFISATMHRHRLERDEHLYKAFQYFDKDSSGYITRDELEIAMTKYGMGDEATIKEIISEVDTDNDGRINYEEFCVMMRSGMQHEGNLLE 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1452 532 PANTHER SERINE/THREONINE-PROTEIN KINASE 49 525 - -
Lal5g1452 532 Gene3D Transferase(Phosphotransferase) domain 1 185 348 - -
Lal5g1452 532 SMART serkin_6 99 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1452 532 MobiDBLite consensus disorder prediction 1 85 - -
Lal5g1452 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Lal5g1452 532 ProSiteProfiles EF-hand calcium-binding domain profile. 456 490 IPR002048 GO:0005509
Lal5g1452 532 MobiDBLite consensus disorder prediction 9 82 - -
Lal5g1452 532 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Lal5g1452 532 CDD STKc_CAMK 99 340 - -
Lal5g1452 532 CDD EFh 463 521 IPR002048 GO:0005509
Lal5g1452 532 Pfam Protein kinase domain 99 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1452 532 ProSitePatterns Protein kinases ATP-binding region signature. 105 132 IPR017441 GO:0005524
Lal5g1452 532 ProSiteProfiles Protein kinase domain profile. 99 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1452 532 SMART efh_1 495 523 IPR002048 GO:0005509
Lal5g1452 532 SMART efh_1 388 416 IPR002048 GO:0005509
Lal5g1452 532 SMART efh_1 424 452 IPR002048 GO:0005509
Lal5g1452 532 SMART efh_1 460 488 IPR002048 GO:0005509
Lal5g1452 532 ProSiteProfiles EF-hand calcium-binding domain profile. 491 526 IPR002048 GO:0005509
Lal5g1452 532 Pfam EF-hand domain pair 389 449 IPR002048 GO:0005509
Lal5g1452 532 Pfam EF-hand domain pair 459 521 IPR002048 GO:0005509
Lal5g1452 532 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Lal5g1452 532 SUPERFAMILY EF-hand 380 520 IPR011992 -
Lal5g1452 532 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Lal5g1452 532 SUPERFAMILY Protein kinase-like (PK-like) 72 363 IPR011009 -
Lal5g1452 532 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Lal5g1452 532 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 49 525 - -
Lal5g1452 532 Gene3D - 349 526 - -
Lal5g1452 532 Gene3D Phosphorylase Kinase; domain 1 101 184 - -
Lal5g1452 532 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1452 Lal-Chr5 17054987 17059412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1452 1 531 EF-hand Containing Proteins AT4G04720 72.080 0.0 784
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal5g1452 Pkinase 2e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1452 K13412 - gmx:100812843 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1452 5 17054987 17059412 Lal5g1452 5 17054987 17059412 ECH