Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1442 ATGAGTTGTTGCTTACCATGCTGCAAATCTGAAGTTGAATCACCCTCTTACACAAAAGTAGAAAGAAAAACCAGAAAAGTTTCAGCAGGAAGACAAACATTCAAATCAATAGCTGCTGCTGTGTCAATTAAGACTGGTAGCAGCAGGCATAGACATATAACAGCAGAGATACTAAAATATGGTGCTGCACAAAATGATGTAAAAGTATTCACATATGAAGAACTTGCTGCTGCAACAGACAACTTTAGCGCTGATTGCCGTATCGGAGAAGGTGGATTTGGGAATGTCTACAGAGGATACATAAAAAGCATTGATCAAACTGTAGCTGTGAAGCAACTGAATAGAGAAGGAACCCAAGGAACAAGAGAATTTTTCGCAGAGGTTTTGATGTTAAGCTTGGTGAAACACCCTAACCTTGTCAAGCTCCTTGGTTATTGTGCAGATGAAGATAATAGGATTTTAGTTTATGAATGCATGGCTAATGGAAGTTTGGAAGATCACCTTCTAGACATAGGTAAAGATAAGGAGCCATTGGATTGGCAGACAAGGATGAAAATAGCTGAGGGAGCAGTTAGAGGACTCGAATACTTGCATAATGGTGCTGATCCGCCAGTGATATTCCGTGATTTCAAATCATCTAATATACTGTTAGATGAAAATTTCAATGCAAAGCTATCAGATTTTGGACTTGCTAAGTTGGGTCCAATTGAAGGCAAGAATCCTGTCTCAACCAGGGTGATGGGAACCTATGGCTATTGTGCACCTGAGTATGCTTCTTCAGGTCAACTATCCACAAAAATAGATATTTATAGTTTTGGTGTAGTGTTTTTGGAGATAATCACTGGTAGGAGGGTAATTGACACAGCAAGATCTGCAGAGGAACAAAACTTGATTGATTGGGCAACACCATTGTTTAAGGACAGAAAGAAGTTCACTCTAATGGCTGATCCTTTGCTAGAAGGTAATTTCCCAGTGAAGGGTCTATTTCAAGCTCTAGCAGTGGCAGCAATGTGCCTCCAAGAGGAACCTGACATGCGGCCTCAAGTGGATGATGTTGTAACAGCTGTTATGCATCTAACAACACAAAAACATGAAGAGAAAGACATTGTTAGTGATTCTCTGAAAAGTGAAGAACATGTTGAGTCTTTTAAAGCTACACCTTCACTTGAAGAGCCAATGGATTAG 1185 0.3992 MSCCLPCCKSEVESPSYTKVERKTRKVSAGRQTFKSIAAAVSIKTGSSRHRHITAEILKYGAAQNDVKVFTYEELAAATDNFSADCRIGEGGFGNVYRGYIKSIDQTVAVKQLNREGTQGTREFFAEVLMLSLVKHPNLVKLLGYCADEDNRILVYECMANGSLEDHLLDIGKDKEPLDWQTRMKIAEGAVRGLEYLHNGADPPVIFRDFKSSNILLDENFNAKLSDFGLAKLGPIEGKNPVSTRVMGTYGYCAPEYASSGQLSTKIDIYSFGVVFLEIITGRRVIDTARSAEEQNLIDWATPLFKDRKKFTLMADPLLEGNFPVKGLFQALAVAAMCLQEEPDMRPQVDDVVTAVMHLTTQKHEEKDIVSDSLKSEEHVESFKATPSLEEPMD 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1442 394 Gene3D Phosphorylase Kinase; domain 1 47 158 - -
Lal5g1442 394 CDD STKc_IRAK 88 353 - -
Lal5g1442 394 ProSiteProfiles Protein kinase domain profile. 82 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1442 394 PANTHER OS07G0668900 PROTEIN 3 388 - -
Lal5g1442 394 Gene3D Transferase(Phosphotransferase) domain 1 159 383 - -
Lal5g1442 394 MobiDBLite consensus disorder prediction 367 385 - -
Lal5g1442 394 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524
Lal5g1442 394 PANTHER RECEPTOR SERINE/THREONINE KINASE 3 388 - -
Lal5g1442 394 Pfam Protein kinase domain 86 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1442 394 SUPERFAMILY Protein kinase-like (PK-like) 66 355 IPR011009 -
Lal5g1442 394 MobiDBLite consensus disorder prediction 367 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1442 Lal-Chr5 16990188 16996135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1442 68 361 Glycoside Hydrolase AT3G07070 64.286 2.55e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lal5g1442 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1442 - - gmx:100305361 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1442 5 16990188 16996135 Lal3g0297 3 1927967 1929981 LSH