Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1439 ATGGCCAGTTTCACATCTTCATCACTTTCACACATTCCACCCTTTTCTTCAGCAGCTTTTCATGATGACTCTTATGAAGACTCCTGCAGTATATGCCTTGAACCTTTCAACACCAATGAACCACCCACTATTACTTGTTGCAAACACGACTATCATCTGCATTGTATCCTTGAATGGTCACAGAGAAGCAAAGAGTGTCCAATATGTTGGCAATCACTTGCTTTGGAAGACTCTGCTAGCCAAGAGCTTTTGGATGCAGTGGAGGCTGAAAAACGCTTAACATCAAGAAACAGACACTCATCTTCATTCACTAGCTCCCATGACGATTCTTCCTCAGATGATTCTGGTTTTGATGAACAAATTATGCAACACCTAATTGCCGCTGCTGAAAGTAGAGCTCGTTTTGTTCATAGACGAGAAAGGCAGAGATCATCTGGAGTAGGTCCTTCAGATGTTCTTGTTTTTAACTCTTCGGTGCATTTACCTGAGATGCAACCAATACTTTCACCTTCACCATCTGGGGGTAGTTCACCAACTCCAGGTGTGCCTTCTGCTGTTGACATTCAACCTCTGACAGCTGCTTTTCCCCCTGTTAATGAGGTTGCGACAAATACTACTCCCCGCAGTGATGTCCCTTTCAGACCCAGAGTTGTCTATAGCCACACACCGTCTGAGAGTGCAAGGAGACTAAACACTTCTGACATGTTCTCTGTCCCCGAGTCATTCAAATCCAAATTTTCAGCTGCTTCAGCCAGATATAAGGAATCCATTTCAAAAAGTACACGTGGCCTTAAAGAGAAGTTACTTGCTCACAATTCATCAGTAAAAGATCTGAGTAAAGGTGTTCAACGTGAGATGAATGCAGGCATTGCTAGTGTTACACGGATGATTGAACGTCTCGATCTTACCTCAAAATGGTCCGCTTCTCCTCTTAGTCCTCTCCATACTGAGGGAACTTCAGGGCTCCCTGTAAAAGGGAAGTCTATTGAAGAGAATAGCATTGGGCATGGTCCTTGTGAAGAGAGTGGAGATCTGGTTCGTGATGTTAATTCTGATGCCCCCTCCCTCGTTTCTCGCATGGTTGTTAGCCGTGCAGAAAGTCCTCCACGTGTTCAGAATGGACATGATGCTGTGAAGACTTAA 1143 0.4436 MASFTSSSLSHIPPFSSAAFHDDSYEDSCSICLEPFNTNEPPTITCCKHDYHLHCILEWSQRSKECPICWQSLALEDSASQELLDAVEAEKRLTSRNRHSSSFTSSHDDSSSDDSGFDEQIMQHLIAAAESRARFVHRRERQRSSGVGPSDVLVFNSSVHLPEMQPILSPSPSGGSSPTPGVPSAVDIQPLTAAFPPVNEVATNTTPRSDVPFRPRVVYSHTPSESARRLNTSDMFSVPESFKSKFSAASARYKESISKSTRGLKEKLLAHNSSVKDLSKGVQREMNAGIASVTRMIERLDLTSKWSASPLSPLHTEGTSGLPVKGKSIEENSIGHGPCEESGDLVRDVNSDAPSLVSRMVVSRAESPPRVQNGHDAVKT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1439 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 363 - -
Lal5g1439 380 SUPERFAMILY RING/U-box 25 75 - -
Lal5g1439 380 MobiDBLite consensus disorder prediction 94 116 - -
Lal5g1439 380 MobiDBLite consensus disorder prediction 169 183 - -
Lal5g1439 380 ProSiteProfiles Zinc finger RING-type profile. 29 69 IPR001841 -
Lal5g1439 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 79 IPR013083 -
Lal5g1439 380 MobiDBLite consensus disorder prediction 164 184 - -
Lal5g1439 380 SMART ring_2 29 69 IPR001841 -
Lal5g1439 380 MobiDBLite consensus disorder prediction 311 346 - -
Lal5g1439 380 Pfam Ring finger domain 27 69 IPR001841 -
Lal5g1439 380 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1439 Lal-Chr5 16971181 16974226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1439 27 78 C3H Transcription Factor Family AT4G23450 48.077 1.17e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1439 K19043 - gmx:100775754 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1439 5 16971181 16974226 Lal3g0299 3 1944858 1948409 LSH