Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1417 ATGGGTTGTGTTCATGCCAAGTGTTGTGGCCAATACTCTACACAATCAGAGGGTGATTCTGAACATGGCACTCACCGTGCCCAAAGGAAGCACATACTCACTCAGAGAGAACTTGAGCTTGTTCCTGTTCCTTCCCACAACTTCACATTGGAATACTCAGTTCTCACTCAGAGGGGATACTACCCCGACTCACTTGATAAGGAAAACCAAGATAGTTTCTGCATTAGGACACAAATTCAAGGTAATCCAAATGTTCATTTCTTTGGTGTGTATGACGGGCATGGTCAATATGGTAGTGAGTGTTCAAATTTTGTTAAGGATAGATTGGTAGAAACATTATCACATGACCCTGCATTGCTGGAGGACCCTGTTAAAGCCTATAATTCGGCTTTCTTGACAACAAATTATGAATTGCATAATAGTGAGATTGATGATTCTATGAGTGGCACTACTGCTATTACGGTGCTTGTTATTGGAGACACCCTGTATGTTGCTAATGTTGGCGATTCGAGAGCGGTGCTAGCTGTTAAGAATGGTAACCGCGTTGTTGCTGAGGACTTATCATCTGATCAGACACCATTTCGGAAAGATGAATGTGATAGGGTGAAACTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAGGTGGAAGGTCTTAAGGATCCCAAAATTCAGACTTGGGGAGATGAAGAGAGTCAGGGTGGCGATCCTCCGAGATTGTGGGTTCCAAATGCGATGTATCCTGGAACTGCTTTCACAAGGAGTGTAGGGGATAATTTGGCTGAGACTATTGGTGTCATTGCTGTTCCAGAGGTCTCAACAGTTCAGCTTACACCAAATCATCTTTTCTTTGTTGTTGCAAGTGACGGCATATTTGAGTTTCTATCAAGTCAAACTGTTGTTGATATGGCAGGAAGTTTTTCAGATCCCTGTGATGCTTGTGCTGCCATTGCTGGAAAGGCATATAAACTATGGTTGGAACATGAGAACCGGACAGATGATATAACGATTACCATTGTTCAGATCAAAGGCCTGTCTCATTCAGGTACATTTCGAGTCGGATCAAGTGAGATAAATGTCAGTACTGTAACAAGGACCAAGAAGGGGAAGGGAACTTCTGAGATATCTGCTTCCACTGGGTCAGATGTATCTCGATCTGTGAGGAACGGTTACTGTGATTTACAGTCCTATCAGCATGTGGTCTCAACGAGAAGCCCAGCCATAGTGGCCCCCTCACCAGCTTGTCAAAGACCAGTTGAATTGGTCACATGTCATTTAACCATACAGAACCACTGCAGAATGAGAATACTGAAACTTGATTTCGACATTGGAAGGGGATTTGCAAAGAATTTGAGAAAAGGAGAATGGTTAGTTTCATGTTACTGCAAATTAGCATCTAGATGA 1401 0.4311 MGCVHAKCCGQYSTQSEGDSEHGTHRAQRKHILTQRELELVPVPSHNFTLEYSVLTQRGYYPDSLDKENQDSFCIRTQIQGNPNVHFFGVYDGHGQYGSECSNFVKDRLVETLSHDPALLEDPVKAYNSAFLTTNYELHNSEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKNGNRVVAEDLSSDQTPFRKDECDRVKLCGARVLSVDQVEGLKDPKIQTWGDEESQGGDPPRLWVPNAMYPGTAFTRSVGDNLAETIGVIAVPEVSTVQLTPNHLFFVVASDGIFEFLSSQTVVDMAGSFSDPCDACAAIAGKAYKLWLEHENRTDDITITIVQIKGLSHSGTFRVGSSEINVSTVTRTKKGKGTSEISASTGSDVSRSVRNGYCDLQSYQHVVSTRSPAIVAPSPACQRPVELVTCHLTIQNHCRMRILKLDFDIGRGFAKNLRKGEWLVSCYCKLASR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1417 466 Pfam Protein phosphatase 2C 70 308 IPR001932 -
Lal5g1417 466 SMART PP2C_4 47 339 IPR001932 -
Lal5g1417 466 Gene3D - 43 343 IPR036457 -
Lal5g1417 466 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 14 421 - -
Lal5g1417 466 CDD PP2Cc 67 341 IPR001932 -
Lal5g1417 466 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 14 421 - -
Lal5g1417 466 SUPERFAMILY PP2C-like 38 343 IPR036457 -
Lal5g1417 466 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Lal5g1417 466 ProSiteProfiles PPM-type phosphatase domain profile. 51 341 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1417 Lal-Chr5 16781360 16792613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1417 1 346 PP2C-type Phosphatase Gene Family AT3G06270 72.493 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1417 - - aprc:113872580 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1417 5 16781360 16792613 Lal3g0320 3 2070807 2074833 LSH