Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1413 AGTTTTATGTTATTTTCTGATAAAGAAGATTATATTTGCAGCAATGAGAACCATCATATGTCAGAAAAGAAACAACAACTGAAAAAGGAGAACTATTCTGTAAGAGGCAGAAGACCAAGAATTGGATTTTCTGATTCATTTTCAACCATTGATTTGGGAGGTTTAGATATTGAAGTGCAACACCAATCTGAGTTTAACTCTAGTCCTAGAACTCTAGAGCCAGGAACCCCTTCTTCAAGGGCAAGTACTTCTGATTCTGAGGTTCAACAAGATTTGAGAGGCACTAACAATAATCAGTGGCGCCAAGGTTTCTTTAAACTACTGAAGAAAGGATCACAAATGCCCTTTCATACATTTCATCCACTTAAGAATGTTCCAAAGCTAACAAGGAGAAAGAGTAAAAGAATAAGGGAGGATCTGATTCCTTCTCTTAGTTCTCCTGCTCTCAAATCATCTTTGGATAGTGAGTTTTGCTGCTTTAAATCATCCTGGAAAAATTTCACTCTCTCTGAGATTCAGGCTGCAACCAATGACTTTAGCCATGATAATTTGATTGGGGAGGGAGGCTATGCTGAGGTTTACTTAGGTAAATTGGAAGATGGAAACTTTGTTGCCATTAAAAGGCTCACAAGAGGGAGCCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATAATAGTGCATGTGGACCACCCAAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAGTTGTCTCCACATGGCAGCCTATCATCCATACTTTATGGACCCAGAGAGAAACTGAATTGGAGCCTAAGGTTTAAAATTGCTATGGGGACTGCTGAGGGCCTCCACTATCTGCATGAGGGATGTCAAAGAAGGATTATTCACAAAGATATCAAGGCTTCTAATATACTCCTCTCAGAGAATTTTGAGCCTCAAATATCTGATTTTGGCCTTTCAAAATGGTTGCCTGACCAATGGACTCACCATACTGTTTCCAAAGTTGAAGGCACCTTTGGCTATCTTCCACCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACTGATGTATATGCTTATGGTGTGCTATTATTGGAGCTTATTACTGGAAGACAAGCATTGGATAGCTCACAGAAAAGTTTGGTTATGTGGGCCAAACCTTTGCTATCTGCAAACAACATCAAAGAGCTTGTTGATCCAACTTTGGCTGATGCTTATGATGAAGAACAGATGAAACTTGTACTAAAGATACTAAGAGGTGAAGAAGAGAGTTTGAAGATGATGAAGGAACGCCAAAAGTCGAAACTTCAAAGGACATACTCAGTAGAATTGAATGATGCAGAAGATTACAACTCAACCAAGTTTTTGAATGATAGGGATAGATTCATGGAGACTATTCTAGTGGGTATTGTATTTTGTGTTACATACACATCAACAATTACTATGGAGGTGGGTCAGATGCAAAGACAGTGGGTTGATTACACCAAATCCTTGTTCATTGAGGGCTTCCTTGATAGTCAGTTTCTGCAACTTCAGCAGCTACAAGATGAGAACAACCCTGATTTTGTGGTTGAAGTTGTTTCTCTCTTCTTTGAAGATTCTGAGAGACTTCTTAATGATCTCACTTTTGCTCTAGATCAGAAAGGTGGTGTTGACTTCAAAAAAGTTGATGCTCATGTTCACCAATTAAAGGGTAGCAGCTCAAGCATAGGTGCACAAAGGGTTAAGAATTGCTGCGTTGCTTTCCGCAACTTCTGCGAGGAACAAAACACAGACGCGTGCCTGAGATGTCTGCAACAAGTGAAGCAAGAGTACTGCCTTGCCAAGAATAAGCTTGAAACATTGTTCAGGCTTGAGCAGCAGATTATGGCAGCTGGTGGGTCAATCCCTATGATTGAACTGAGTTTCTAA 1926 0.3972 SFMLFSDKEDYICSNENHHMSEKKQQLKKENYSVRGRRPRIGFSDSFSTIDLGGLDIEVQHQSEFNSSPRTLEPGTPSSRASTSDSEVQQDLRGTNNNQWRQGFFKLLKKGSQMPFHTFHPLKNVPKLTRRKSKRIREDLIPSLSSPALKSSLDSEFCCFKSSWKNFTLSEIQAATNDFSHDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGSQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRFKIAMGTAEGLHYLHEGCQRRIIHKDIKASNILLSENFEPQISDFGLSKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSANNIKELVDPTLADAYDEEQMKLVLKILRGEEESLKMMKERQKSKLQRTYSVELNDAEDYNSTKFLNDRDRFMETILVGIVFCVTYTSTITMEVGQMQRQWVDYTKSLFIEGFLDSQFLQLQQLQDENNPDFVVEVVSLFFEDSERLLNDLTFALDQKGGVDFKKVDAHVHQLKGSSSSIGAQRVKNCCVAFRNFCEEQNTDACLRCLQQVKQEYCLAKNKLETLFRLEQQIMAAGGSIPMIELSF 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1413 641 CDD HPT 530 610 IPR008207 GO:0000160
Lal5g1413 641 Pfam Hpt domain 530 609 IPR008207 GO:0000160
Lal5g1413 641 MobiDBLite consensus disorder prediction 64 93 - -
Lal5g1413 641 SMART serkin_6 179 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1413 641 SUPERFAMILY Protein kinase-like (PK-like) 164 423 IPR011009 -
Lal5g1413 641 Gene3D Transferase(Phosphotransferase) domain 1 256 454 - -
Lal5g1413 641 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 28 461 - -
Lal5g1413 641 Pfam Protein tyrosine and serine/threonine kinase 182 387 IPR001245 GO:0004672|GO:0006468
Lal5g1413 641 Gene3D Phosphorylase Kinase; domain 1 143 253 - -
Lal5g1413 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Lal5g1413 641 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 524 630 IPR008207 GO:0000160
Lal5g1413 641 Gene3D HPT domain 483 640 IPR036641 GO:0000160
Lal5g1413 641 PANTHER OS08G0249100 PROTEIN 28 461 - -
Lal5g1413 641 ProSitePatterns Protein kinases ATP-binding region signature. 185 207 IPR017441 GO:0005524
Lal5g1413 641 ProSiteProfiles Protein kinase domain profile. 179 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1413 641 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 490 627 IPR036641 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1413 Lal-Chr5 16752716 16759726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1413 150 422 Receptor kinase-like Gene Family AT1G53420 40.925 3.10e-63 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lal5g1413 PK_Tyr_Ser-Thr 2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1413 - - gmx:100776081 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1413 5 16752716 16759726 Lal3g0328 3 2130989 2133446 LSH
Lal5g1413 5 16752716 16759726 Lal11g0477 11 3700474 3712176 LSH