Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1409 ATGGAACCCTCACCATCTAATAATCCAGAACAATATACCAATGACCGTTCATCTTCTCCTATTTGGGATCTCACCGAACTCCTCAACTTCAACCTCGACGACATTCAAATCTCTCCCTCCGTTGACCACCACCATCCTCTCCCTCCTCCGTCGCCGGACAATCACAAAATTCGTAAGCGAGACCCTAGGCTCACGTGCTCCAATTTCCTCGCTGGTCACGTGCCTTGTGCGTGCCCCGAGCTCGATGCTATGCTCGATGATGAAGGTTTACCTCGTAAGAAACGTGTCAGAACCGCACGTGCTTCCGTTGCGATCGTGCGGTGTCAGGTTCCTACGTGTGAGGTTGATATTTCAGAGCTTAAGGGTTATCATAAGAGGCATAGGGTTTGTTTGAGTTGTGCAAGTGCTGCTACTGTTTTCCTTCATGGAGATGAGCCTAATAGATACTGTCAACAGTGTGGAAAGTTTCACATATTATCGGATTTTGATGAAGGCAAACGCAGCTGTAGAAGAAAATTAGAGCGCCATAACAAACGAAGGCGAAGAAAGCCTGCAGATTCTGAAGTTGCTGCTGGTCATGAACTTCAACATGTCACACAGAATGAGGATTTTAGTTACGATGGGGAAGCAGGGAAAGATTGTTCAAATTCTAGTGGCGAGATAAATGGAAAAGAAGTGTCACCGGATCATGAAGATGAACCACTTGCTATTCCGTGCTCAGCTCCTGATACCCAGAATGTTAATAGTGATGACATTCCATCTCTCGTTGCTTCCGGTGAAACACAAGCGAATAGTGGAAAAGATGTTTCCAACATTTCTAATACACCTTCATATTGTGACAATAAGAGTGCTTATTCATCTATGTGCCAAACAGGTCGGATATCTTTTAAGCTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCGAGTATGCCTTTAGAGCTGGAGGGATATATCCGCCCTGGATGTACAATTCTGACAACTTTTATTGCAATGCCAAAAACTATGTGGATAAACTTACTCGAAGACCCCCTGCACTATGTGTGTGATCTTGTTGCTCCAGGAAAGATGCTTTCTGGAAGAGGTAGCGCACTAGTTCATTTGGATGACATGATCTTTCGTGTTATGAAAGATGGAACTTCTGTGATGAAAGTCGAGGTAAACATTCAGGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGCAAACCCATGGAGTTTCTAGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTCTGGAAAGTATCAGAAGTATGAGTATTGTGTTCAATCTCCCCATAACTGGACTGGAGATAATGTTTCTTGTGCTTTCGACAATCAGTTATACAAGATACATATCCCTCATACGGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCAAACTTTATTCCTGTACTCATTGGTGATAAAGAAATTTGCATTGAAATGAAGAGGTTACAGCAAAAATTAGACGTGTCTCTCCTTTCCAAACAATTCCAGTCTGCAGCTGTTGGTTCTGTCTGCAGCTCATGTCAGGCTTTTGCACTTAGACATACATCATCGTCAGATTTACTTGTAGATATTGCATGGTTGCTTAAAGACCCCACTTCAGAAAATTTTGATCGGGTGATGACGGCTTCACAGATTCAAAGATATTGTTATTTGTTGGATTTTCTAATATGCAATGATTCAACAATCATTTTACGCAAAATATTACCCAATTTGACGATCTTGACAGAAAGTATGGAATCAAATGTTGTGAGTAATAGGATGAGTGGTATCGACATGACACATCTGCTGAAATGCATGCATAATGCGAGAGATGTCATTTATCAGAAACAGCACAAAGATGGAGGTGTAATTGTGCACTCTGAAATGGAAAGCTTTAAAGTTGCTCAGAGCTGCTTCCAAGATTACATGCCATCAGTTGCAATTAACAGTCAGGGTATCATGTCAACATCAGATGCAAGGTTGGGAGTATCAAGAAGTTCAACTTCTAATGAGAGAAATGAAAGGATACCACTTTTGAAGAGGGATATTATAATGAACATGGAAGAATTGCTGGAAACGTCTAGCCATCGATATCTTCCGCGAGGTTTCCTGAGCTCGAAACCAGCTATTTTTGTGATTGCTTCACTTGCTGTTTGTCTTGGGTTATGTGTAGCCGTCCTTCATCCTGGGAAGGTTAATGAGCTTGCAATATCAATTAGAAGGTGCTTGTTTAACAATTCATAG 2319 0.4191 MEPSPSNNPEQYTNDRSSSPIWDLTELLNFNLDDIQISPSVDHHHPLPPPSPDNHKIRKRDPRLTCSNFLAGHVPCACPELDAMLDDEGLPRKKRVRTARASVAIVRCQVPTCEVDISELKGYHKRHRVCLSCASAATVFLHGDEPNRYCQQCGKFHILSDFDEGKRSCRRKLERHNKRRRRKPADSEVAAGHELQHVTQNEDFSYDGEAGKDCSNSSGEINGKEVSPDHEDEPLAIPCSAPDTQNVNSDDIPSLVASGETQANSGKDVSNISNTPSYCDNKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPLELEGYIRPGCTILTTFIAMPKTMWINLLEDPLHYVCDLVAPGKMLSGRGSALVHLDDMIFRVMKDGTSVMKVEVNIQAPRLHYVHPTYFEAGKPMEFLACGSNLLQPKFRLLVSFSGKYQKYEYCVQSPHNWTGDNVSCAFDNQLYKIHIPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICIEMKRLQQKLDVSLLSKQFQSAAVGSVCSSCQAFALRHTSSSDLLVDIAWLLKDPTSENFDRVMTASQIQRYCYLLDFLICNDSTIILRKILPNLTILTESMESNVVSNRMSGIDMTHLLKCMHNARDVIYQKQHKDGGVIVHSEMESFKVAQSCFQDYMPSVAINSQGIMSTSDARLGVSRSSTSNERNERIPLLKRDIIMNMEELLETSSHRYLPRGFLSSKPAIFVIASLAVCLGLCVAVLHPGKVNELAISIRRCLFNNS 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1409 772 MobiDBLite consensus disorder prediction 173 273 - -
Lal5g1409 772 MobiDBLite consensus disorder prediction 241 273 - -
Lal5g1409 772 Gene3D - 103 170 IPR036893 GO:0003677|GO:0005634
Lal5g1409 772 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 769 IPR044817 GO:0003677
Lal5g1409 772 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 17 769 - -
Lal5g1409 772 Pfam SBP domain 108 183 IPR004333 GO:0003677
Lal5g1409 772 ProSiteProfiles Zinc finger SBP-type profile. 105 183 IPR004333 GO:0003677
Lal5g1409 772 SUPERFAMILY SBT domain 106 186 IPR036893 GO:0003677|GO:0005634
Lal5g1409 772 MobiDBLite consensus disorder prediction 40 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1409 Lal-Chr5 16722761 16730167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1409 18 765 SBP-box Gene Family AT5G18830 45.408 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal5g1409 SBP 2.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1409 - - aprc:113863838 1125.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1409 5 16722761 16730167 Lal11g0478 11 3714014 3721072 LSH