Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1407 ATGCAATCAGCTCAAGAACCACCCAGTTATCAAGTTTCTGAGATTTCTCACCAGACTGAACCCCAGCTAAGCAAAGAGGTTTCGGAAAATGGACCCTGCGGGAAGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCGGTAGGGTTTGGCAGCACTAGTGGTGGTGTAAGGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGGGATATCATCATCAAAAGGCTTCTTGCGAGCCTTGAGCTTCAAAAGGAAAGGAAATGTAGTAGATGGCGAAAGAAGTAGCCTGCTTAATTCAAACCCTCCAGCATCTGCATCAAATCCGTCCCCTTCAGTTTCTACACCCGTTTCTGCAAGGACGTATTATGAACAGACTAAGATACATAAAGACGCTGTTCGTCCTAAGGTTTCAAGATCCCTTTCTGTACCTGTACGAAATGTTGTAATTGTAAGATCTGTCTCCTTTTCTACCCGTAGTGAGAAGGAACAAGATTCAAATGATGATCAAATAACTCCTGCGCCAGTAGAAACTACCGCTGATGAAGAAATTCCTGAAGAGGAAGCGGTGTGCAGGATATGTCTTGATGTGTGTGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGCGACCTGAGATTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAAGGAAATAAGAAATGTGAGGTGTGTGGGCAAGAGGTTGAGAATTTACCTGTGACGTTGCTTCGTTTTTCCAGCTCTGTTCAACGGCAAGGCAGACCATCACAGGGTCAACAGAACCTACACCCAGAGTCGATAAGTGCCTGGCAAGACTTTGTGGTGCTTGTTCTGATAAGCACGATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATATGAAGACTCAAGCCATCATTATAGCAGCACCATTTGCCTTTACAATGGGCCTCTTGGCATCTATTTTTGCAGTCATCCTTGCAATTAGAGAGTATATATGGACATATGCTGCTCTCGAGTTTGCTCTTGTGGCTTTAACCGTGCATCTTTTTTATTCTATGTTGCATGTGAAGGCCATTTATGCAATACTACTATCATCAGTTCTGGGTTTTGGAATTGCTATAGGTATCAACTATGCATATATCCAATATGCTGCATGGCGGCTTCAAGTCTCTCATGATGATAGCCCAGTATGA 1197 0.4286 MQSAQEPPSYQVSEISHQTEPQLSKEVSENGPCGKRPDISLQVPPRPVGFGSTSGGVRVLDHSQSFSKGISSSKGFLRALSFKRKGNVVDGERSSLLNSNPPASASNPSPSVSTPVSARTYYEQTKIHKDAVRPKVSRSLSVPVRNVVIVRSVSFSTRSEKEQDSNDDQITPAPVETTADEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECAIKWFSTKGNKKCEVCGQEVENLPVTLLRFSSSVQRQGRPSQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPDMKTQAIIIAAPFAFTMGLLASIFAVILAIREYIWTYAALEFALVALTVHLFYSMLHVKAIYAILLSSVLGFGIAIGINYAYIQYAAWRLQVSHDDSPV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1407 398 MobiDBLite consensus disorder prediction 1 56 - -
Lal5g1407 398 Pfam RING-variant domain 190 236 IPR011016 GO:0008270
Lal5g1407 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 244 IPR013083 -
Lal5g1407 398 ProSiteProfiles Zinc finger RING-CH-type profile. 182 243 IPR011016 GO:0008270
Lal5g1407 398 CDD RING_CH-C4HC3_MARCH 190 237 - -
Lal5g1407 398 PANTHER ZINC FINGER PROTEIN 101 398 - -
Lal5g1407 398 PANTHER ZINC FINGER PROTEIN 10 101 - -
Lal5g1407 398 MobiDBLite consensus disorder prediction 92 118 - -
Lal5g1407 398 MobiDBLite consensus disorder prediction 1 26 - -
Lal5g1407 398 SUPERFAMILY RING/U-box 186 240 - -
Lal5g1407 398 SMART ringv_2 189 237 IPR011016 GO:0008270
Lal5g1407 398 PANTHER OS02G0165000 PROTEIN 10 101 - -
Lal5g1407 398 PANTHER OS02G0165000 PROTEIN 101 398 - -
Lal5g1407 398 MobiDBLite consensus disorder prediction 158 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1407 Lal-Chr5 16700170 16707228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1407 203 298 C3H Transcription Factor Family AT5G59000 30.208 3.65e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1407 - - gmx:100527094 590.112