Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1404 ATGAATCAGTACCACATCTACGAAGCCATTGGTCGCGGAAAATACTCGACCGTGTACAAAGGTAGAAAGAAGCAGACAATTGAATATTTCGCCATCAAAAGCGTCGATAAATCTCAGAAAAACAAGGTGCTTCAAGAAGTCAGGGTTCTTCACTCTTTGGATCACCAAAATGTACTCAAGTTCTATTCCTGGTATGAAACTTCTGCTCACCTATGGTTGGTATTGGAGTATTGTGTTGGAGGAGATTTGCTTTCCATATTACGGCAGGACACTCAACTTCCTGAAGATTCAGTTCATGATCTTGCTTGGGACCTAGTCAAGGCTTTGCAGTTTTTACATTCAAATGGAATAATATATTGTGACCTGAAACCATCAAATATCCTACTGGATGAAAATGGACGTACGAAGCTATGTGATTTTGGGTTGGCTAGAAAGTTAAGAGATATATCAAAAGCTCCATCTTCGTCGTTGCCTCAAGCAAAACGTGGAACACCGTCTTACATGGCTCCGGAGCTTTTTGAGGATGGTGGAGTCCATTCTTATGCTTCTGATTTCTGGGCCCTAGGGTGTGTACTATATGAATGTTATACTGGGAGGCCTCCCTTTTTGGGAAGAGAATTCACTCAGCTTGTAAAATCCATTATTTCAGATCCAACTCCACCTCTCCCTGGCAATCCGAGTCGACCTTTTGTCAATTTAATTAACTCTCTGCTGGTAAAAGATCCAGCTGAAAGAATACAGTGGCCTGAGCTTTGTGGACATGCATTTTGGAGTACCAAATTGACTATGGTGCCTCTACCTGCTCAACTTGCATTTGATGATATGATAGAACTACATGCTAAACCATGCATACCAGAAAGGAATGGTGATAAATCTTCCCATAACAAGACCCCTCCCAAATATCGTGAAAAAGATGTGAAGGGGGTGATGAAGAAGGATGAAAATTCCATTTTAGGTTCTAGAGGCATTGAGACACCAACAAGGGCAACACCAAATGGCCACAGAACTCAGGCAAAGGTTTCTGGCAAAATAGCTGAAGCGAAGCAGAAAGGTCCTTCCAAAATTAGCAAGGTTGTGAATCTTTTGAGACTGTCAAGAATAGCCAAATCAAATTTGCAAAAAGAAAATGAGAAGGAAAACTATCGACGCCCCTTGCCTAACAACTCTGAAAATGACTCTGAAGTTAAAATTGAGAACACTGACATGGAACTTGATTTTAATGAGAACACTGAAGATGATGCACCTGAAGAAACTGATGGCTTAGAACATACAACTTCCATACCTGATGAGAAAATGGACAATAGTGATCAGAAACAGGGTAAAATAGAGGAGACTACAAATAATATATCCCAGTTGGACACTCCATCTATTGTTAACACAACTGTTTCAAATGATCTGAGGTCAGTTGATCAAGAGTCAACACCTGATTATTCTGATATATCTGCTATTTCTCCCAGTGTGAGCCCACAGGTAAAGAAACATAGAGTTAAAGAAGAAGCAGGATCAGGCCTTGACTCTGAATCTTCAAGGTCGTCTAACAATCTCTCTCAAGTTCTTTGGCATCCATCTGATCTCTCAGTCAGACCTGTAATGCCCAGCAGAAAAGTTGATAAAGTCTCAGAAGTCATTCCTTCACTTCCTTTTGAGGCTTTGCAAGCATCTGATTTTGTCAAGTTGCCTAAAGAGCAATTGGACGCAATCCTAAACAGGATTATTGCCATTTTGAATGGGAATGCCAGCATTGGAGAGAAACAGAATTTGATTAGGTACCTTGAGATGTTAAGCAGTAATGCTGATGCGGCTAACATATTGACCAATGGACCAATAATGCTCATACTTGTAAAATTGCTTCGCCAATCTAAGGCATTAGCCTTGCGTGTTCAACTTGCTTCACTGATTGGTTTGTTGATTCGGCACTCCACTTTTGTTGATGACAGTTTGGCTAATTCTGGAATTTTAGGTTCACTGACTGATGGCCTTAGAGACAAGCAGGAAAAAGTGAGGAGGTTTTCCATGGCTGCTTTGGGTGAGTTGCTATTCTATATATCGACTCAAAATGCGGATTGCAGCAATCCACTCGAATCTCCATCAAAGGACAACAGGACTTCGGTTGGCTGGCAGGTTTCAAATTCGTTAATATCTTTTGTCTCATCAATGTTGAGGAAGGGAGAGGATGATTTAACTCAATTATATGCATTGAGAACAGTTGAGAATGTTTGCAGCCAAGGAGGAACCTGGGTGGGGCGTTTGAGCAGCCAAGATGTTATAAGTAATCTCTGCTATATCTATAGGGCGTCAGGAAAGCAAGAGAGCATGAGGCTTACTGCAGGGTCATGTTTGGTGCGCTTGGTTCGTTTTAATCCTCCTAGCATTCAATCAGTCATGGAGAAACTGTCATTCAAGGACCTAGCTTCTGCTCTTGTCAAGGGTAGTCCACGAGAGCAACAAATCAGCTTAAATCTTCTAAACATGGCTATGCTTGGAAGTCACATGTTCACAAATATGGGAAGATACCTTCTACCACTTGCGGAGGATAAAAATCTGATCCCAAGTCTTTTGGCTTTTGTGGAGCAGGGTAGTGAAGTTTTAAAAGGAAAGGCACTTGTCCTTGTGGCTCTCCTCTGTAAGCATGGTAGGAGGTGGCTTTCACTCTTCTTTTGTAGCCAAAAGTTACTTTCTGTGGTGGACAGGTTGGGAAAGGAGAAGGATGCCTATGTACATCAGTGTTTAGATGCATTTGTTCATGTTGTGGCATCTACTATTCCAGGTTTACTAGATACAATAACAGGTGATATCCAGCAAATGATGGGAGGAAGGCGCCAAGGGCATGTCTCTGCCCTTACCAGCAGATCTGCTCCAAAAACCAACATTCATGTGTTTCCTGTTGTCCTTCATCTTATTGGGAGTTCAATTTTGAAACACAAAGTTGTTACCCCTCATGTCTTGCAACAGTTAGCCAATCTAATCAAACTAACGGAGACACCATTTCAGGGAAGAGATGACTTCCAAATAACCCTTCTTCGAGTTTTGGAGTGTCTCACAGAGGAATCCCTTGTGGTTCTTGGAAACCCTGACATTTTCGTACGTGAAATCCTTCCTAGCTTGACAGTTCTCTATAAGGGTAATAAAGATGGTGATGCCAGATTTTTGTGCCTTAAAATTCTTTTCGATGTGATGATTATTGTTTTGAGTGAACCGGTTGAAGAAGAGCAGAGATTGAAAGACCTGAAATTCATATCAAATGCCCGTTTTCTTCCTCTCTACCCAACCTTGATTGAAGATGAGGATCCTATTCCTATATTTGCACAAAAGCTTCTTGTCATGCTACTAGAGTTTAGTTTTATTACAATTCCGGACATTTTACATATAAAGACAATTTCACAATGCTTTGAGTTCTTGCTTGGTGATCTGTCAAATGCAAATGTGAATAATGTTAAGCTGTGCCTAGCTCTGGCTTCTGCTCCCGAAATGGAGTCCAAGATACTCTCTCAATTAAAAGTAGTTCGGAGGATTGGCAATTTTCTTGAGTTTGTATATGCAAAGGGTATGGAAGATTTGCTGGAACCAACTCTTGGGCTGTGTAAGGCTTTTCTAGCGCGTTCCGTTACCTTTGCAAAAGGCTTCAACTACTCAACAGAACCAACTCTTCTAGGTGACTTTCCTTCTGAGATGGGTGGTGCTGTTGATCCCCAGCAATGCATAAGAGATATTGCAGATCTTGCAAGCAATGTTGGTGTCTTACTAGAGTTGAGTGCCTCCAATGAAACCAATATTGTGGACATAGCTTCTGAATGTGTAGTTTTACTGCTCAAGGCAGCTCCTAGAGAAGCCACCACTGGTCTACTAACCAATCTACCCAAGGTCAGTGTAATCCTAGAGTCTTGGAGTAGAGGCATCCCTCACTTGTTGGTGCAGCGAATGCTTCATGCTTTAGGGTATGCATGCAAGCAGTACTTATTGCATGCAATGATATTATCAATATCAATACCAGAGATTTCAAGAATTGAAGTGATTGTTTCTGAACTCAGAAGTTCTGGTGTTCCTGGTTTAACCAAAGCTTCTGCTTTAGCAGCCTTGGAATTGCAGCGGCTGCCTCGCTGCATTTGA 4107 0.4154 MNQYHIYEAIGRGKYSTVYKGRKKQTIEYFAIKSVDKSQKNKVLQEVRVLHSLDHQNVLKFYSWYETSAHLWLVLEYCVGGDLLSILRQDTQLPEDSVHDLAWDLVKALQFLHSNGIIYCDLKPSNILLDENGRTKLCDFGLARKLRDISKAPSSSLPQAKRGTPSYMAPELFEDGGVHSYASDFWALGCVLYECYTGRPPFLGREFTQLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWPELCGHAFWSTKLTMVPLPAQLAFDDMIELHAKPCIPERNGDKSSHNKTPPKYREKDVKGVMKKDENSILGSRGIETPTRATPNGHRTQAKVSGKIAEAKQKGPSKISKVVNLLRLSRIAKSNLQKENEKENYRRPLPNNSENDSEVKIENTDMELDFNENTEDDAPEETDGLEHTTSIPDEKMDNSDQKQGKIEETTNNISQLDTPSIVNTTVSNDLRSVDQESTPDYSDISAISPSVSPQVKKHRVKEEAGSGLDSESSRSSNNLSQVLWHPSDLSVRPVMPSRKVDKVSEVIPSLPFEALQASDFVKLPKEQLDAILNRIIAILNGNASIGEKQNLIRYLEMLSSNADAANILTNGPIMLILVKLLRQSKALALRVQLASLIGLLIRHSTFVDDSLANSGILGSLTDGLRDKQEKVRRFSMAALGELLFYISTQNADCSNPLESPSKDNRTSVGWQVSNSLISFVSSMLRKGEDDLTQLYALRTVENVCSQGGTWVGRLSSQDVISNLCYIYRASGKQESMRLTAGSCLVRLVRFNPPSIQSVMEKLSFKDLASALVKGSPREQQISLNLLNMAMLGSHMFTNMGRYLLPLAEDKNLIPSLLAFVEQGSEVLKGKALVLVALLCKHGRRWLSLFFCSQKLLSVVDRLGKEKDAYVHQCLDAFVHVVASTIPGLLDTITGDIQQMMGGRRQGHVSALTSRSAPKTNIHVFPVVLHLIGSSILKHKVVTPHVLQQLANLIKLTETPFQGRDDFQITLLRVLECLTEESLVVLGNPDIFVREILPSLTVLYKGNKDGDARFLCLKILFDVMIIVLSEPVEEEQRLKDLKFISNARFLPLYPTLIEDEDPIPIFAQKLLVMLLEFSFITIPDILHIKTISQCFEFLLGDLSNANVNNVKLCLALASAPEMESKILSQLKVVRRIGNFLEFVYAKGMEDLLEPTLGLCKAFLARSVTFAKGFNYSTEPTLLGDFPSEMGGAVDPQQCIRDIADLASNVGVLLELSASNETNIVDIASECVVLLLKAAPREATTGLLTNLPKVSVILESWSRGIPHLLVQRMLHALGYACKQYLLHAMILSISIPEISRIEVIVSELRSSGVPGLTKASALAALELQRLPRCI 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1404 1368 CDD STKc_ULK4 3 257 - -
Lal5g1404 1368 SUPERFAMILY Protein kinase-like (PK-like) 1 258 IPR011009 -
Lal5g1404 1368 MobiDBLite consensus disorder prediction 320 337 - -
Lal5g1404 1368 MobiDBLite consensus disorder prediction 467 514 - -
Lal5g1404 1368 MobiDBLite consensus disorder prediction 283 306 - -
Lal5g1404 1368 SUPERFAMILY ARM repeat 569 917 IPR016024 -
Lal5g1404 1368 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1365 IPR044591 GO:0000911|GO:0000914|GO:0008017
Lal5g1404 1368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Lal5g1404 1368 MobiDBLite consensus disorder prediction 404 418 - -
Lal5g1404 1368 MobiDBLite consensus disorder prediction 373 440 - -
Lal5g1404 1368 MobiDBLite consensus disorder prediction 319 353 - -
Lal5g1404 1368 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1404 1368 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1404 1368 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lal5g1404 1368 Gene3D - 555 912 IPR011989 -
Lal5g1404 1368 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal5g1404 1368 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Lal5g1404 1368 MobiDBLite consensus disorder prediction 419 440 - -
Lal5g1404 1368 MobiDBLite consensus disorder prediction 467 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1404 Lal-Chr5 16679375 16686714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1404 1 270 AGC Kinase Gene Family AT1G45160 33.013 1.09e-36 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Lal5g1404 Pkinase 2.4e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1404 5 16679375 16686714 Lal3g0331 3 2161483 2170280 LSH