Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1401 ATGCCCACTACGCTAAGAACCATAATCCACGACCTCAAATCTCGATCCCACCGTGTAATACAAGACGCTTCTTCAATTGATGTGGCGGTGGTTAGCGACGGTTTAACTCAGAGTTACTGGGCCCACATGCCGCAGGAACTACTGAGAGAAGTGCTTATCAGAATCGAAGCTTCGGAGGACACGTGGCCGAAGAGGAAGAGTGTGGTGGCATGTGCTGGAGTGTGCCATAGCTGGAGACACATTACTAAAGAAATTGTTAAGATTCCTCAATTTTCTTCTAGGATCACTTTCCCTATTTCTGTTAAGCAGCCTGGCCCTAGGGAGCATCTCCTCCACTGCTTTATAAAGCGGAACCGTTCCACCCAAACATATCACTTGTATCTCAGCTTAACTAGTTCACTAGCTGATGATGGGAAGTTCCTTCTGGCTGCACAAAAGTGCAGACGCCCCACCAGCACAGATTATATGATCTCTTTTGACGCAGATGATATGTCAAAGGGAAGCAACGCCCACGTTGGGAAACTGAGATCGAATTTTCTGGGAACCAAGTTTACAATCTATGATGCCCAGCCGCCTCATGCAGGGGCAAAGATTTCAAAAAGTTGCTCCTCTAGGTTCACGAATCTAAAACAAGTTTCACCCAGGGTTCCTACAGGCCACTATATAGTGGCCCACATCTCATATGATTTGAATGTGCTTGGATCCAGGGGGCCTAGGAGAATGCATTGTGCCTTGGATTCCATTCCTGCCTCTGCAATTGAACCAGGAGGGATAGCCCCTACACAGACTGAACTGTCTCATAAAAACATAGAGACATTTTGTTCATCACCTTTTTCTCGATCAGAGCCAACTTCTGTGAATAACTCCATATCTGGAGCCCTTGGTGAACGAAAGGATAGTGTACTAGTGTTAAAAAACAAGGCTCCCAGGTGGCACGAGCAGCTGCAGTGTTGGTGCTTAAACTTTGATGGACGGGTGACGATTGCCTCAGTTAAAAACTTTCAGCTGGTGGCTTCCCCGGAAAATGGTCCTGCTGGACCAGAACACAATGAGATCATTCTCCAATTTGGAAAAGTTGGGAAGGACGTTTTTACGATGGATTACCGATACCCTATCTCAGCATTTCAGGCATTTGCAATTTGCCTTAGCAGCTTTGATACCAAGATTGCTTGTGAATAA 1179 0.4614 MPTTLRTIIHDLKSRSHRVIQDASSIDVAVVSDGLTQSYWAHMPQELLREVLIRIEASEDTWPKRKSVVACAGVCHSWRHITKEIVKIPQFSSRITFPISVKQPGPREHLLHCFIKRNRSTQTYHLYLSLTSSLADDGKFLLAAQKCRRPTSTDYMISFDADDMSKGSNAHVGKLRSNFLGTKFTIYDAQPPHAGAKISKSCSSRFTNLKQVSPRVPTGHYIVAHISYDLNVLGSRGPRRMHCALDSIPASAIEPGGIAPTQTELSHKNIETFCSSPFSRSEPTSVNNSISGALGERKDSVLVLKNKAPRWHEQLQCWCLNFDGRVTIASVKNFQLVASPENGPAGPEHNEIILQFGKVGKDVFTMDYRYPISAFQAFAICLSSFDTKIACE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1401 392 SUPERFAMILY Tubby C-terminal domain-like 89 392 IPR025659 -
Lal5g1401 392 Pfam Tub family 101 387 IPR000007 -
Lal5g1401 392 Gene3D Tubby Protein; Chain A 97 392 IPR025659 -
Lal5g1401 392 SUPERFAMILY F-box domain 34 84 IPR036047 GO:0005515
Lal5g1401 392 PRINTS Tubby superfamily signature 155 171 IPR000007 -
Lal5g1401 392 PRINTS Tubby superfamily signature 171 195 IPR000007 -
Lal5g1401 392 PRINTS Tubby superfamily signature 220 247 IPR000007 -
Lal5g1401 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Lal5g1401 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Lal5g1401 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Lal5g1401 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Lal5g1401 392 PANTHER TUBBY-RELATED 5 392 - -
Lal5g1401 392 ProSitePatterns Tub family signature 2. 377 392 IPR018066 -
Lal5g1401 392 Pfam F-box domain 40 86 IPR001810 GO:0005515
Lal5g1401 392 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 5 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1401 Lal-Chr5 16651661 16661606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1401 13 392 TUB Transcription Factor Family AT2G47900 68.146 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal5g1401 Tub 2.8e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1401 K19600 - gmx:100778346 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1401 5 16651661 16661606 Lal3g0333 3 2179109 2182635 LSH
Lal5g1401 5 16651661 16661606 Lal11g0485 11 3781767 3785913 LSH