Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1397 ATGGAATCCTCTGCTAACGAAGAACGTCTTGCTTTTGGAAAAATGGAATATGGGTGCAAGCATTATAGGAGAAGATGCATGATTCGAGCTCCATGCTGCAATGAGATATATTCATGTCGTCATTGTCACAATGAAGCAACGAGTGTTCTGAAGCATTTTAATCGACATGATCTTGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACAGAGCAATTGGCTGCTCAAATTTGCACAAACTGTGGTGTCAGAATGGGAGAATATTTCTGTGACATATGCAAATTCTTTGATGATGATACAGGGAAACAACAATTTCATTGTGATGAATGTGGGATATGCAGGGTTGGTGGTCAACAGAACTTTTTCCACTGCAACAAATGTGGATCTTGCTATTCCGTTGCCCTGCGTGATAATCATTCATGTGTGGAGAATTCTATGAGGCATCACTGTCCCATTTGTTATGAGTACCTTTTTGACTCAATGAAAGACACTGCTGTAATGAAATGTGGTCACACAATGCATTGTGAATGTTACGACGAGATGATATACCGCGAAAAGTTCTGTTGCCCCATATGCTCCAAATCAGTGATTGATATGTCTAGGGAGTGGAAGAGAATTGATGAAGAGATCGAAGCAACTGTCATGCCTGAAGATTATCGGTTTGGATACTTTGTAATGACTGCAATGACACAACCCAAGTTTACTTTCACATTATCGGGCAAAAATGCGGTCGCTGCAGTTCATATAATACTCGTACGGTCGCTCCTCCTGTTCTTCCTTAATGACCAGATTGTTCTAGTTCTGGAAACAGATGTTGCCACAATTAATGTAGAGTAA 846 0.4031 MESSANEERLAFGKMEYGCKHYRRRCMIRAPCCNEIYSCRHCHNEATSVLKHFNRHDLVRQDVKQVVCSVCDTEQLAAQICTNCGVRMGEYFCDICKFFDDDTGKQQFHCDECGICRVGGQQNFFHCNKCGSCYSVALRDNHSCVENSMRHHCPICYEYLFDSMKDTAVMKCGHTMHCECYDEMIYREKFCCPICSKSVIDMSREWKRIDEEIEATVMPEDYRFGYFVMTAMTQPKFTFTLSGKNAVAAVHIILVRSLLLFFLNDQIVLVLETDVATINVE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1397 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 2 226 - -
Lal5g1397 281 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Lal5g1397 281 Pfam Zinc finger, C3HC4 type (RING finger) 153 195 IPR018957 GO:0046872
Lal5g1397 281 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Lal5g1397 281 SMART ring_2 153 195 IPR001841 -
Lal5g1397 281 Pfam CHY zinc finger 19 98 IPR008913 GO:0008270
Lal5g1397 281 SUPERFAMILY RING/U-box 152 201 - -
Lal5g1397 281 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Lal5g1397 281 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 2 226 - -
Lal5g1397 281 ProSiteProfiles Zinc finger CHY-type profile. 12 86 IPR008913 GO:0008270
Lal5g1397 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 223 IPR013083 -
Lal5g1397 281 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1397 Lal-Chr5 16627042 16633325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1397 14 223 C2H2 Transcription Factor Family AT3G18290 37.209 6.34e-41 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1397 5 16627042 16633325 Lal11g0489 11 3809248 3812833 LSH
Lal19g1507 19 17427566 17430784 Lal5g1397 5 16627042 16633325 PCT
Lal5g1397 5 16627042 16633325 Lal19g1507 19 17427566 17430784 PCT