Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g1395 ATGGCGAGACCTACGAAGACGCAGTTCTCTTCCGATGACGAACCACTTTCCAACGCTTCCAGTTCATCAGAAGAAGAGGAGCAGCAGCAACAGCAAGAAATCGATGAACAAGATGATGAAGATGAGCTTGAAGCGGTGGCTCGTTCTGCTGGTTCCGGCGATGATGATAACCCTCCCGATTCTGATGACGATTCTCCACCTGCTCAAGATGCTGATGAGGACGAAGAGGGTGGAGATGATGTTGATCCTGAAATAAGCAAGCGCGAGAAGGCTAGATTAAGGGAAATGGAAAAGATGAAGAAACAGAAGATTCAAGAGATATTGGATGCACAAAATGCTTCCATTGATGCTGACATGAACAATAGAGGAAAGGGGCGGCTGAAGTATCTCTTACAGCAGACGGAATTATTTGCTCATTTTGCAAAAGGTGATCAATCTTCATCTCAGAAGAAGTCAAGGGGAAGGGGCCGTCATGCATCAAAAGTGACAGAAGAGGAGGAAGATGAAGAATACCTAAAAGAAGAAGACGATGTTGCGAACAACACGCGTCTTCTGACACAACCATCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTGAACTGGCTCATACGATTGTATGAAAATGGAATAAACGGAATTCTGGCAGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCCTTATTGGGTTATTTGCATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAACGAGATTCGGCGCTTTTGTCCTGTTTTGCGTGCAATTAAGTTCCTTGGCAACCCTGATGAAAGGAGGCATATAAAAGAGGAATTATTGGTCGCTGGTAAGTTTGATGTTTGTGTTACAAGTTTTGAAATGGCAATCAAGGAAAAGTCTGCTTTGCGTAGATTTAGTTGGCGCTATATAATTATTGATGAAGCCCATCGAATCAAGAATGAGAATTCCCTCCTGTCCAAAACAATGAGGATCTACAGTACAAACTATCGGCTCCTTATTACTGGCACACCACTTCAGAACAATCTCCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAAGAGGTTGTTCAACAATTACACAAGGTCCTCCGACCATTTCTTCTTCGAAGATTGAAGTCAGATGTTGAAAAAGGGTTGCCTCCAAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAGATGCAGAAGCAGTATTATAAAGCACTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGCCTACTGAATATAGCTATGCAACTACGTAAATGTTGTAATCACCCATACCTTTTTCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCAAGGGTCCTTATATTTTCACAGATGACTAGGCTACTAGACATACTTGAAGATTATTTAATGTTCCGAGGATATCTATATTGCCGTATAGATGGTAATACTGGTGGAGATGAACGTGATGCCTCCATTGAGGCTTTCAACAAACCGGGAAGTGAGAAATTTGTCTTCTTGTTGTCAACTCGAGCTGGAGGTCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGACAGTGACTGGAATCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATAGGTCAGAAGAAAGAAGTTCAAGTTTTCCGGTTTTGCACAGAGTATACAATTGAGGAGAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAGCAAGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTACAGATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACGGCTGAGCTCGATGCCAAGATGAAGAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGAAAAGGATGAGAACAAAGTTGATTTCAAAAAAATTGTAAGCGATAATTGGATTGAACCATCCAAAAGAGAGCGAAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTACTAAACCAAAAGAGCCCCGTATTCCTAGGATGCCCCAGTTGCATGATTTTCAGTTTTTCAACACACATAGGCTGAGTGAGCTGTATGAAAAGGAAGTGCGCTATCTCGTGCAAGCACATCAGAAGAATCAAGTAAAGGACTCAATAGATGTTGACGAACCTGAAGAGCTGGGAGATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAACACCTGCTAGAGCAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATACTTTTATTAGAGCCTGTGAAAAGTATGGTAGAAATGATATTATGAGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAGAGATATGCGATGGTCTTCAAAGAAAGATACAAGGAATTAAATGACTATGACCGGATTATTAAAAACATTGAGAGGGGGGAGGCCAGAATTTCTAGGAAAGATGAGATCATGAGAGCCATTGGGAAGAAATTGGACCGGTATAAGAATCCATGGCTGGAGTTGAAGGTTCAGTATGGTCAAAACAAAGGGAAGCTATACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGATATGGGAACTGGGATGAGTTGAAGGCAGCATTTCGAACATCGCCCTTGTTTCGTTTTGATTGGTTTGTTAAGTCTCGCACAACACAGGAGCTTGCGAGGAGGTGTGACACTCTTATTCGGCTGATAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAAAAGAAACTAGCCAAGAACAATACCCCATCAAAGCGAGCCTCGGGAAGACAAACAGAGATTCCATCTTCTAAGAAGCGCAGGCAGTTAACAATTGATGATTATTCAACTGGGAAGAGGAGAAAATAA 3207 0.4169 MARPTKTQFSSDDEPLSNASSSSEEEEQQQQQEIDEQDDEDELEAVARSAGSGDDDNPPDSDDDSPPAQDADEDEEGGDDVDPEISKREKARLREMEKMKKQKIQEILDAQNASIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASKVTEEEEDEEYLKEEDDVANNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIKEELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRIYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGDERDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKVDFKKIVSDNWIEPSKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLVQAHQKNQVKDSIDVDEPEELGDPLTAEELEEKEHLLEQGFSSWSRKDFNTFIRACEKYGRNDIMSIASEMEGKTEEEVERYAMVFKERYKELNDYDRIIKNIERGEARISRKDEIMRAIGKKLDRYKNPWLELKVQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLIEKENQEYDERERQARKEKKLAKNNTPSKRASGRQTEIPSSKKRRQLTIDDYSTGKRRK 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g1395 1068 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 372 IPR014001 -
Lal5g1395 1068 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 10 1068 - -
Lal5g1395 1068 Gene3D iswi atpase 901 933 - -
Lal5g1395 1068 Gene3D - 934 1037 - -
Lal5g1395 1068 MobiDBLite consensus disorder prediction 56 80 - -
Lal5g1395 1068 PANTHER SNF2/RAD54 HELICASE FAMILY 10 1068 - -
Lal5g1395 1068 Coils Coil 996 1034 - -
Lal5g1395 1068 Gene3D - 416 708 IPR027417 -
Lal5g1395 1068 MobiDBLite consensus disorder prediction 81 98 - -
Lal5g1395 1068 SMART sant 846 895 IPR001005 -
Lal5g1395 1068 SMART sant 948 1009 IPR001005 -
Lal5g1395 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 693 IPR027417 -
Lal5g1395 1068 MobiDBLite consensus disorder prediction 28 43 - -
Lal5g1395 1068 Gene3D - 196 411 IPR038718 -
Lal5g1395 1068 SUPERFAMILY Homeodomain-like 849 899 IPR009057 -
Lal5g1395 1068 MobiDBLite consensus disorder prediction 141 174 - -
Lal5g1395 1068 MobiDBLite consensus disorder prediction 1 27 - -
Lal5g1395 1068 Pfam SLIDE 903 1013 IPR015195 GO:0003677|GO:0005634|GO:0006338
Lal5g1395 1068 CDD DEXHc_SMARCA1_SMARCA5 192 412 IPR044754 GO:0005524
Lal5g1395 1068 Pfam SNF2-related domain 208 475 IPR000330 GO:0005524|GO:0140658
Lal5g1395 1068 SMART helicmild6 526 610 IPR001650 -
Lal5g1395 1068 Coils Coil 20 40 - -
Lal5g1395 1068 Pfam HAND 759 840 IPR015194 GO:0003677|GO:0006338|GO:0031491
Lal5g1395 1068 MobiDBLite consensus disorder prediction 1045 1068 - -
Lal5g1395 1068 CDD SANT 849 893 IPR001005 -
Lal5g1395 1068 Pfam Helicase conserved C-terminal domain 498 610 IPR001650 -
Lal5g1395 1068 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 500 651 IPR001650 -
Lal5g1395 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 410 IPR027417 -
Lal5g1395 1068 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 758 848 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lal5g1395 1068 CDD SF2_C_SNF 496 621 - -
Lal5g1395 1068 Gene3D ISWI, HAND domain 747 845 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lal5g1395 1068 SMART ultradead3 191 383 IPR014001 -
Lal5g1395 1068 MobiDBLite consensus disorder prediction 1017 1034 - -
Lal5g1395 1068 Coils Coil 86 113 - -
Lal5g1395 1068 MobiDBLite consensus disorder prediction 1017 1068 - -
Lal5g1395 1068 Gene3D - 846 900 - -
Lal5g1395 1068 SUPERFAMILY Homeodomain-like 901 1023 IPR009057 -
Lal5g1395 1068 ProSiteProfiles SANT domain profile. 845 897 IPR017884 -
Lal5g1395 1068 MobiDBLite consensus disorder prediction 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g1395 Lal-Chr5 16600241 16608362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal5g1395 216 637 RAD5 or RAD16-like Gene Family AT1G02670 27.327 8.01e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal5g1395 SNF2_N 3.7e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g1395 K11654 - gmx:100809750 1893.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g1395 5 16600241 16608362 Lal11g0491 11 3825373 3834876 LSH
Lal19g1505 19 17409883 17418044 Lal5g1395 5 16600241 16608362 PCT
Lal5g1395 5 16600241 16608362 Lal19g1505 19 17409883 17418044 PCT